Solyc05g053500.3.1 (Solyc05g053500.3)


Aliases : Solyc05g053500.3

Description : 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family Encodes a member of the GATA factor family of zinc finger transcription factors. GATA transcription factor 1 (GATA1)


Gene families : OG_01_0000059 (Gene family) Phylogenetic Tree(s): OG0000059_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc05g053500.3.1
Cluster HCCA cluster: Cluster_282

Target Alias Description ECC score Gene Family Method Actions
AT2G18380 GATA20 GATA transcription factor 20 0.03 Gene family
AT3G54810 BME3-ZF, BME3, GATA8 Plant-specific GATA-type zinc finger transcription... 0.03 Gene family
AT4G34680 GATA3 GATA transcription factor 3 0.02 Gene family
AT5G26930 GATA23 GATA transcription factor 23 0.03 Gene family
Cre06.g266950 No alias No description available 0.02 Gene family
GSVIVT01012523001 No alias 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.03 Gene family
GSVIVT01017011001 No alias 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.03 Gene family
GSVIVT01018180001 No alias 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.04 Gene family
LOC_Os02g43150 Os02g0645600 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.05 Gene family
MA_103421g0030 No alias 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.02 Gene family
Smo405209 PACid_15411529 No description available 0.03 Gene family
Solyc01g090760.3.1 Solyc01g090760.3 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.05 Gene family
Solyc04g015360.3.1 Solyc04g015360.3 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.03 Gene family
Zm00001d023539 GRMZM2G118214 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.05 Gene family
Zm00001d037605 No alias 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.03 Gene family
Zm00001d039113 GRMZM2G325850 No description available 0.02 Gene family
Zm00001d048391 GRMZM2G532534 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.03 Gene family

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
MF GO:0008270 zinc ion binding IEA InterProScan
MF GO:0043565 sequence-specific DNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000679 Znf_GATA 181 214
No external refs found!