AMTR_s00130p00115490 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00130.59

Description : RNA biosynthesis.transcriptional activation.TUB transcription factor


Gene families : OG_01_0000335 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000335_tree ,
OG_02_0000295 (LandPlants) Phylogenetic Tree(s): OG_02_0000295_tree ,
OG_03_0005934 (SeedPlants) Phylogenetic Tree(s): OG_03_0005934_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00130p00115490
Cluster HCCA: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000367.38 No alias RNA biosynthesis.transcriptional activation.TUB... 0.01 Archaeplastida
Cpa|evm.model.tig00001049.14 No alias RNA biosynthesis.transcriptional activation.TUB... 0.01 Archaeplastida
Gb_22686 No alias transcription factor (TUB) 0.02 Archaeplastida
LOC_Os01g48370.1 No alias transcription factor (TUB) 0.03 Archaeplastida
LOC_Os05g48670.1 No alias transcription factor (TUB) 0.03 Archaeplastida
MA_169150g0010 No alias transcription factor (TUB) 0.02 Archaeplastida
Mp6g01640.1 No alias transcription factor (TUB) 0.03 Archaeplastida
Pp3c20_2190V3.1 No alias tubby like protein 3 0.02 Archaeplastida
Pp3c23_17770V3.1 No alias tubby like protein 3 0.02 Archaeplastida
Zm00001e028052_P001 No alias transcription factor (TUB) 0.03 Archaeplastida
Gb_22686 No alias transcription factor (TUB) 0.02 LandPlants
LOC_Os01g48370.1 No alias transcription factor (TUB) 0.03 LandPlants
Mp6g01640.1 No alias transcription factor (TUB) 0.02 LandPlants
Zm00001e024653_P002 No alias transcription factor (TUB) 0.01 LandPlants
Zm00001e028052_P001 No alias transcription factor (TUB) 0.03 LandPlants
LOC_Os01g48370.1 No alias transcription factor (TUB) 0.03 SeedPlants
Zm00001e028052_P001 No alias transcription factor (TUB) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000007 Tubby_C 119 376
IPR001810 F-box_dom 55 100
No external refs found!