AMTR_s00130p00090930 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00130.42

Description : Pentatricopeptide repeat-containing protein At5g24830 OS=Arabidopsis thaliana


Gene families : OG_01_0015413 (Archaeplastida) Phylogenetic Tree(s): OG_01_0015413_tree ,
OG_02_0015258 (LandPlants) Phylogenetic Tree(s): OG_02_0015258_tree ,
OG_03_0014939 (SeedPlants) Phylogenetic Tree(s): OG_03_0014939_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00130p00090930
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00227320 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g24830... 0.03 Archaeplastida
AMTR_s00001p00269540 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g24830... 0.04 LandPlants
AMTR_s00027p00227320 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g24830... 0.03 LandPlants
AMTR_s00001p00269540 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g24830... 0.04 SeedPlants
AMTR_s00027p00227320 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g24830... 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 515 563
IPR002885 Pentatricopeptide_repeat 235 284
IPR002885 Pentatricopeptide_repeat 588 630
IPR002885 Pentatricopeptide_repeat 445 490
IPR002885 Pentatricopeptide_repeat 341 386
IPR002885 Pentatricopeptide_repeat 308 338
IPR002885 Pentatricopeptide_repeat 406 438
IPR002885 Pentatricopeptide_repeat 198 227
No external refs found!