Solyc05g007880.3.1 (Solyc05g007880.3)

Aliases : Solyc05g007880.3

Description : 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions. cycling DOF factor 2 (CDF2)

Gene families : OG_01_0000024 (Gene family) Phylogenetic Tree(s): OG0000024_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): Solyc05g007880.3.1
Cluster	HCCA cluster: Cluster_76

Target	Alias	Description	ECC score	Gene Family Method
AT1G26790	No alias	Dof-type zinc finger DNA-binding family protein	0.1	Gene family
AT3G47500	CDF3	cycling DOF factor 3	0.05	Gene family
AT5G62430	CDF1	cycling DOF factor 1	0.08	Gene family
Cre12.g521150	No alias	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.02	Gene family
GSVIVT01011433001	No alias	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.03	Gene family
GSVIVT01019969001	No alias	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.09	Gene family
GSVIVT01029943001	No alias	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.04	Gene family
LOC_Os01g15900	Os01g0264000	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.04	Gene family
LOC_Os07g48570	Os07g0685000	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.04	Gene family
Solyc03g115940.3.1	Solyc03g115940.3	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.03	Gene family
Zm00001d013724	GRMZM2G061292	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.03	Gene family
Zm00001d022525	No alias	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.03	Gene family
Zm00001d027846	GRMZM2G162749	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.02	Gene family
Zm00001d040362	GRMZM2G089949	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.04	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	112	168

External Links

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Solyc05g007880.3.1 (Solyc05g007880.3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation