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  5. Solyc05g005090.3.1

Solyc05g005090.3.1 (Solyc05g005090.3)


Aliases : Solyc05g005090.3

Description : 27.3.22 RNA.regulation of transcription.HB,Homeobox transcription factor family homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants. KNOTTED1-like homeobox gene 6 (KNAT6)


Gene families : OG_01_0000241 (Gene family) Phylogenetic Tree(s): OG0000241_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc05g005090.3.1
Cluster HCCA cluster: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT1G23380 KNAT6, KNAT6L, KNAT6S KNOTTED1-like homeobox gene 6 0.04 Gene family
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.11 Gene family
AT5G11060 KNAT4 KNOTTED1-like homeobox gene 4 0.02 Gene family
AT5G25220 KNAT3 KNOTTED1-like homeobox gene 3 0.05 Gene family
GSVIVT01007715001 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.08 Gene family
GSVIVT01009273001 No alias No description available 0.03 Gene family
GSVIVT01013790001 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.05 Gene family
GSVIVT01018257001 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.05 Gene family
GSVIVT01019880001 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
GSVIVT01031241001 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
LOC_Os01g19694 Os01g0302500 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
LOC_Os03g51690 Os03g0727000 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.04 Gene family
LOC_Os05g03884 Os05g0129700 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
LOC_Os06g43860 Os06g0646600 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.04 Gene family
MA_121880g0020 No alias No description available 0.02 Gene family
Smo90744 PACid_15414935 No description available 0.02 Gene family
Solyc08g041820.3.1 Solyc08g041820.3 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
Solyc12g010410.2.1 Solyc12g010410.2 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.04 Gene family
Zm00001d010948 GRMZM2G094241 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.06 Gene family
Zm00001d018742 GRMZM2G028041 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.06 Gene family
Zm00001d033859 GRMZM2G017087 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.07 Gene family
Zm00001d033861 GRMZM2G000743 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.05 Gene family
Zm00001d034212 GRMZM2G135447 No description available 0.02 Gene family
Zm00001d035439 GRMZM5G832409 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.04 Gene family
Zm00001d040611 GRMZM2G087741 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.04 Gene family
Zm00001d048471 GRMZM2G060507,... 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005540 KNOX1 90 131
IPR005541 KNOX2 141 188
IPR008422 Homeobox_KN_domain 255 294
IPR005539 ELK_dom 215 236
No external refs found!