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  5. Aev_g43300

Aev_g43300


Description : scaffold nucleoporin of nuclear pore complex *(NUP188) & original description: none


Gene families : OG0006216 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006216_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g43300

Target Alias Description ECC score Gene Family Method Actions
AT4G38760 No alias Protein of unknown function (DUF3414) 0.03 OrthoFinder output from all 47 species
Adi_g055512 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.04 OrthoFinder output from all 47 species
Ala_g14349 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.05 OrthoFinder output from all 47 species
Als_g16173 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.03 OrthoFinder output from all 47 species
Dde_g13684 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.07 OrthoFinder output from all 47 species
GSVIVT01024075001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
LOC_Os10g06610.1 LOC_Os10g06610 NUP188 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Len_g14722 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.04 OrthoFinder output from all 47 species
MA_10433306g0010 No alias NUP188 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Mp1g18700.1 No alias NUP188 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Msp_g15694 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.03 OrthoFinder output from all 47 species
Ppi_g48554 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.02 OrthoFinder output from all 47 species
Solyc11g039880.2.1 Solyc11g039880 NUP188 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Solyc11g039890.2.1 Solyc11g039890 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g04845 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.02 OrthoFinder output from all 47 species
Zm00001e002662_P001 Zm00001e002662 NUP188 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR018864 Nucleoporin_Nup188_N 87 973
No external refs found!