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  5. Solyc04g072850.3.1

Solyc04g072850.3.1 (Solyc04g072850.3)


Aliases : Solyc04g072850.3

Description : 10.6.2 cell wall.degradation.mannan-xylose-arabinose-fucose Glycosyl hydrolase family protein


Gene families : OG_01_0000215 (Gene family) Phylogenetic Tree(s): OG0000215_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc04g072850.3.1
Cluster HCCA cluster: Cluster_287

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01006776001 No alias 10.6.2 cell... 0.02 Gene family
GSVIVT01009003001 No alias 10.6.2 cell... 0.03 Gene family
LOC_Os01g19220 Os01g0296700 10.6.2 cell... 0.02 Gene family
LOC_Os04g54810 Os04g0640700 10.6.2 cell... 0.02 Gene family
LOC_Os11g18730 Os11g0291450,... 10.6.2 cell... 0.02 Gene family
MA_140124g0010 No alias 10.6.2 cell... 0.02 Gene family
Solyc11g044910.2.1 Solyc11g044910.2 10.6.2 cell... 0.03 Gene family
Zm00001d026415 GRMZM2G136895 10.6.2 cell... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan
BP GO:0005975 carbohydrate metabolic process IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002772 Glyco_hydro_3_C 1769 1998
IPR002772 Glyco_hydro_3_C 1025 1253
IPR026891 Fn3-like 548 615
IPR026891 Fn3-like 1320 1386
IPR026891 Fn3-like 2066 2132
IPR002772 Glyco_hydro_3_C 250 479
IPR001764 Glyco_hydro_3_N 4 208
IPR001764 Glyco_hydro_3_N 1475 1726
IPR001764 Glyco_hydro_3_N 728 982
No external refs found!