Solyc04g072000.3.1 (Solyc04g072000.3)


Aliases : Solyc04g072000.3

Description : 20.1 stress.biotic encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs. homolog of carrot EP3-3 chitinase (EP3)


Gene families : OG_01_0000294 (Gene family) Phylogenetic Tree(s): OG0000294_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc04g072000.3.1
Cluster HCCA cluster: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AT2G43570 CHI chitinase, putative 0.03 Gene family
AT2G43580 No alias Chitinase family protein 0.01 Gene family
AT3G47540 No alias Chitinase family protein 0.03 Gene family
AT3G54420 ATEP3, EP3,... homolog of carrot EP3-3 chitinase 0.04 Gene family
GSVIVT01038111001 No alias 20.1 stress.biotic encodes an EP3 chitinase that is... 0.02 Gene family
GSVIVT01038120001 No alias 20.1 stress.biotic encodes an EP3 chitinase that is... 0.04 Gene family
LOC_Os10g39700 Os10g0543400 20.1 stress.biotic encodes a basic chitinase involved in... 0.02 Gene family
MA_102538g0010 No alias 20.1 stress.biotic Chitinase family protein 0.03 Gene family
MA_10427514g0010 No alias 20.1 stress.biotic encodes an EP3 chitinase that is... 0.03 Gene family
MA_10430424g0010 No alias 20.1 stress.biotic encodes an EP3 chitinase that is... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0008061 chitin binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000726 Glyco_hydro_19_cat 77 276
IPR001002 Chitin-bd_1 30 59
No external refs found!