Solyc04g056270.3.1 (Solyc04g056270.3)


Aliases : Solyc04g056270.3

Description : 27.3.39 RNA.regulation of transcription.AtSR Transcription Factor family Encodes a putative CAM binding transcription factor. Loss of function mutations show enhanced resistance to fungal and bacterial pathogens suggesting that CAMTA functions to suppress defense responses. signal responsive 1 (SR1)


Gene families : OG_01_0000629 (Gene family) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc04g056270.3.1
Cluster HCCA cluster: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AT1G67310 No alias Calmodulin-binding transcription activator protein with... 0.02 Gene family
AT2G22300 CAMTA3, SR1 signal responsive 1 0.06 Gene family
AT5G64220 No alias Calmodulin-binding transcription activator protein with... 0.03 Gene family
GSVIVT01004860001 No alias 27.3.39 RNA.regulation of transcription.AtSR... 0.04 Gene family
GSVIVT01010506001 No alias No description available 0.01 Gene family
GSVIVT01010510001 No alias 30.11 signalling.light Calmodulin-binding transcription... 0.02 Gene family
LOC_Os01g69910 Os01g0923600 30.11 signalling.light Calmodulin-binding transcription... 0.03 Gene family
LOC_Os03g27080 Os03g0388500 17.5.3 hormone... 0.04 Gene family
LOC_Os04g31900 Os04g0388500 30.11 signalling.light Calmodulin-binding transcription... 0.03 Gene family
LOC_Os07g43030 Os07g0623100 17.5.3 hormone... 0.02 Gene family
LOC_Os10g22950 Os10g0375600 27.3.39 RNA.regulation of transcription.AtSR... 0.02 Gene family
Zm00001d022185 GRMZM2G017368 27.3.39 RNA.regulation of transcription.AtSR... 0.02 Gene family
Zm00001d042313 GRMZM2G171600 30.11 signalling.light Calmodulin-binding transcription... 0.05 Gene family
Zm00001d047209 GRMZM2G431243 27.3.39 RNA.regulation of transcription.AtSR... 0.06 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002909 IPT_dom 514 592
IPR000048 IQ_motif_EF-hand-BS 948 967
IPR000048 IQ_motif_EF-hand-BS 924 943
IPR005559 CG-1_dom 21 134
IPR020683 Ankyrin_rpt-contain_dom 721 811
No external refs found!