Pp3c6_1550V3.1


Description : KNOTTED1-like homeobox gene 3


Gene families : OG_01_0000263 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000263_tree ,
OG_02_0000128 (LandPlants) Phylogenetic Tree(s): OG_02_0000128_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c6_1550V3.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00178300 evm_27.TU.AmTr_v1... Homeobox protein HD1 OS=Brassica napus 0.02 Archaeplastida
AMTR_s00045p00169620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AMTR_s00085p00165180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.06 Archaeplastida
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.06 Archaeplastida
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.02 Archaeplastida
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.02 Archaeplastida
AT5G25220 KNAT3 KNOTTED1-like homeobox gene 3 0.03 Archaeplastida
GSVIVT01004811001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
GSVIVT01007715001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
GSVIVT01009273001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01013790001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
GSVIVT01031241001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
GSVIVT01035921001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
Gb_00573 No alias transcription factor (KNOX) 0.02 Archaeplastida
Gb_14470 No alias transcription factor (KNOX) 0.02 Archaeplastida
LOC_Os01g19694.1 No alias transcription factor (KNOX) 0.05 Archaeplastida
LOC_Os03g47016.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os03g51690.2 No alias transcription factor (KNOX) 0.04 Archaeplastida
LOC_Os03g51710.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
LOC_Os05g03884.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
Solyc01g100510.4.1 No alias transcription factor (KNOX) 0.02 Archaeplastida
Solyc02g081120.4.1 No alias transcription factor (KNOX) 0.05 Archaeplastida
Solyc04g077210.3.1 No alias transcription factor (KNOX) 0.02 Archaeplastida
Solyc05g005090.4.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
Solyc07g007120.3.1 No alias transcription factor (KNOX) 0.02 Archaeplastida
Solyc08g041820.3.1 No alias transcription factor (KNOX) 0.02 Archaeplastida
Zm00001e000173_P003 No alias transcription factor (KNOX) 0.02 Archaeplastida
Zm00001e005170_P001 No alias transcription factor (KNOX) 0.02 Archaeplastida
Zm00001e005545_P001 No alias transcription factor (KNOX) 0.04 Archaeplastida
Zm00001e005547_P001 No alias transcription factor (KNOX) 0.02 Archaeplastida
Zm00001e011538_P001 No alias transcription factor (KNOX) 0.04 Archaeplastida
Zm00001e017489_P001 No alias transcription factor (KNOX) 0.04 Archaeplastida
Zm00001e027562_P001 No alias transcription factor (KNOX) 0.04 Archaeplastida
Zm00001e029453_P001 No alias transcription factor (KNOX) 0.02 Archaeplastida
AMTR_s00023p00178300 evm_27.TU.AmTr_v1... Homeobox protein HD1 OS=Brassica napus 0.02 LandPlants
AMTR_s00045p00169620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 LandPlants
AMTR_s00085p00165180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.05 LandPlants
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.05 LandPlants
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.02 LandPlants
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.02 LandPlants
AT5G25220 KNAT3 KNOTTED1-like homeobox gene 3 0.02 LandPlants
GSVIVT01007715001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 LandPlants
GSVIVT01009273001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 LandPlants
GSVIVT01013790001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 LandPlants
GSVIVT01035921001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 LandPlants
Gb_10887 No alias transcription factor (KNOX) 0.01 LandPlants
LOC_Os01g19694.1 No alias transcription factor (KNOX) 0.04 LandPlants
LOC_Os03g47016.1 No alias transcription factor (KNOX) 0.02 LandPlants
LOC_Os03g51690.2 No alias transcription factor (KNOX) 0.03 LandPlants
LOC_Os03g51710.1 No alias transcription factor (KNOX) 0.03 LandPlants
LOC_Os05g03884.1 No alias transcription factor (KNOX) 0.03 LandPlants
Solyc01g100510.4.1 No alias transcription factor (KNOX) 0.01 LandPlants
Solyc02g081120.4.1 No alias transcription factor (KNOX) 0.05 LandPlants
Solyc04g077210.3.1 No alias transcription factor (KNOX) 0.02 LandPlants
Solyc05g005090.4.1 No alias transcription factor (KNOX) 0.02 LandPlants
Solyc07g007120.3.1 No alias transcription factor (KNOX) 0.02 LandPlants
Solyc08g041820.3.1 No alias transcription factor (KNOX) 0.02 LandPlants
Zm00001e005545_P001 No alias transcription factor (KNOX) 0.03 LandPlants
Zm00001e005547_P001 No alias transcription factor (KNOX) 0.02 LandPlants
Zm00001e011538_P001 No alias transcription factor (KNOX) 0.03 LandPlants
Zm00001e017489_P001 No alias transcription factor (KNOX) 0.03 LandPlants
Zm00001e027562_P001 No alias transcription factor (KNOX) 0.03 LandPlants
Zm00001e029453_P001 No alias transcription factor (KNOX) 0.02 LandPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005541 KNOX2 436 483
IPR005540 KNOX1 376 414
No external refs found!