Solyc04g016540.2.1 (Solyc04g016540.2)


Aliases : Solyc04g016540.2

Description : No description available


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc04g016540.2.1
Cluster HCCA cluster: Cluster_289

Target Alias Description ECC score Gene Family Method Actions
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Gene family
AT1G26900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Gene family
AT3G16610 No alias pentatricopeptide (PPR) repeat-containing protein 0.01 Gene family
AT3G26540 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
GSVIVT01016860001 No alias No description available 0.07 Gene family
GSVIVT01017075001 No alias No description available 0.1 Gene family
GSVIVT01030054001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_109221g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
MA_519985g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo99756 PACid_15418911 No description available 0.01 Gene family
Solyc03g098420.3.1 Solyc03g098420.3 No description available 0.02 Gene family
Zm00001d003047 GRMZM2G077420 No description available 0.02 Gene family
Zm00001d005149 GRMZM2G138303 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d013941 GRMZM2G073017 No description available 0.04 Gene family
Zm00001d016828 GRMZM2G165521 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d033495 GRMZM5G849971 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.09 Gene family
Zm00001d037891 No alias No description available 0.03 Gene family
Zm00001d051816 GRMZM2G029859 No description available 0.02 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 167 217
IPR002885 Pentatricopeptide_repeat 673 719
IPR002885 Pentatricopeptide_repeat 571 615
IPR002885 Pentatricopeptide_repeat 67 113
IPR002885 Pentatricopeptide_repeat 240 265
IPR002885 Pentatricopeptide_repeat 472 501
IPR002885 Pentatricopeptide_repeat 444 466
IPR002885 Pentatricopeptide_repeat 545 566
IPR002885 Pentatricopeptide_repeat 270 300
IPR002885 Pentatricopeptide_repeat 343 362
IPR002885 Pentatricopeptide_repeat 647 671
IPR002885 Pentatricopeptide_repeat 371 398
No external refs found!