Solyc04g015830.3.1 (Solyc04g015830.3)

Aliases : Solyc04g015830.3

Description : cell.organisation.cytoskeleton.actin.actin binding Encodes a protein with high homology to animal villin. VLN3 is a Ca2+-regulated villin involved in actin filament bundling. villin 3 (VLN3)

Gene families : OG_01_0000541 (Gene family) Phylogenetic Tree(s): OG0000541_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc04g015830.3.1
Cluster HCCA cluster: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
AT4G30160 VLN4, ATVLN4 villin 4 0.06 Gene family
GSVIVT01029237001 No alias cell.organisation.cytoskeleton.actin.actin... 0.09 Gene family
GSVIVT01033261001 No alias cell.organisation.cytoskeleton.actin.actin... 0.06 Gene family
LOC_Os04g51440 Os04g0604000 cell.organisation.cytoskeleton.actin.actin... 0.02 Gene family
LOC_Os06g44890 Os06g0659300 cell.organisation.cytoskeleton.actin.actin... 0.02 Gene family
LOC_Os08g14230 Os08g0240800 cell.organisation.cytoskeleton.actin.actin... 0.04 Gene family
Solyc10g079405.1.1 Solyc10g079405.1 cell.organisation.cytoskeleton.actin.actin... 0.03 Gene family
Zm00001d006533 GRMZM2G365250 cell.organisation.cytoskeleton.actin.actin... 0.04 Gene family
Zm00001d011854 GRMZM2G180988 cell.organisation.cytoskeleton.actin.actin... 0.04 Gene family
Zm00001d042084 GRMZM2G047310 cell.organisation.cytoskeleton.actin.actin... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEA InterProScan
BP GO:0007010 cytoskeleton organization IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007123 Gelsolin-like_dom 29 111
IPR007123 Gelsolin-like_dom 149 217
IPR007123 Gelsolin-like_dom 635 710
IPR007123 Gelsolin-like_dom 403 482
IPR007123 Gelsolin-like_dom 265 337
IPR007123 Gelsolin-like_dom 531 600
IPR003128 Villin_headpiece 913 948
No external refs found!