Solyc04g015530.2.1 (Solyc04g015530.2)


Aliases : Solyc04g015530.2

Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases Encodes ADPG1, a polygalacturonase protein involved in silique and anther dihiscence. Loss of function mutations have reduced seed set, indehiscent fruit and reduced pollen shedding. ADPG1


Gene families : OG_01_0000383 (Gene family) Phylogenetic Tree(s): OG0000383_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc04g015530.2.1

Target Alias Description ECC score Gene Family Method Actions
AT2G41850 ADPG2, PGAZAT polygalacturonase abscission zone A. thaliana 0.03 Gene family
AT3G07970 QRT2 Pectin lyase-like superfamily protein 0.02 Gene family
GSVIVT01017302001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01032114001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01032117001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01033303001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
LOC_Os03g59330 Os03g0808000,... 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc01g087280.1.1 Solyc01g087280.1 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Zm00001d034551 GRMZM2G092746,... 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d038874 GRMZM2G079263 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan
BP GO:0005975 carbohydrate metabolic process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 127 446
No external refs found!