Solyc04g009410.3.1 (Solyc04g009410.3)

Aliases : Solyc04g009410.3

Description : 29.5.11.20 protein.degradation.ubiquitin.proteasom 20S proteasome beta subunit PBC1 truncated protein (PBC1) proteasome beta subunit C1 (PBC1)

Gene families : OG_01_0002888 (Gene family) Phylogenetic Tree(s): OG0002888_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): Solyc04g009410.3.1
Cluster	HCCA cluster: Cluster_131

Target	Alias	Description	ECC score	Gene Family Method
AT1G21720	PBC1	proteasome beta subunit C1	0.09	Gene family
AT1G77440	PBC2	20S proteasome beta subunit C2	0.04	Gene family
Cpa\|evm.model.tig00000826.22	No alias	29.5.11.20 protein.degradation.ubiquitin.proteasom 20S...	0.03	Gene family
Cre06.g267500	No alias	29.5.11.20 protein.degradation.ubiquitin.proteasom 20S...	0.16	Gene family
GSVIVT01008836001	No alias	29.5.11.20 protein.degradation.ubiquitin.proteasom 20S...	0.09	Gene family
LOC_Os02g08520	Os02g0182500	29.5.11.20 protein.degradation.ubiquitin.proteasom 20S...	0.02	Gene family
LOC_Os06g43570	Os06g0643100	29.5.11.20 protein.degradation.ubiquitin.proteasom 20S...	0.06	Gene family
MA_70161g0010	No alias	29.5.11.20 protein.degradation.ubiquitin.proteasom 20S...	0.04	Gene family
Smo266913	PACid_15412087	No description available	0.02	Gene family
Zm00001d015526	GRMZM2G117544	29.5.11.20 protein.degradation.ubiquitin.proteasom 20S...	0.03	Gene family
Zm00001d036758	GRMZM2G045371	29.5.11.20 protein.degradation.ubiquitin.proteasom 20S...	0.09	Gene family
Zm00001d046600	GRMZM2G092975	29.5.11.20 protein.degradation.ubiquitin.proteasom 20S...	0.09	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004298	threonine-type endopeptidase activity	IEA	InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005839	proteasome core complex	IEA	InterProScan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEA	InterProScan
MF	GO:0070003	threonine-type peptidase activity	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	334	516

External Links

No external refs found!

Solyc04g009410.3.1 (Solyc04g009410.3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation