Description : H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein
Gene families : OG_01_0005231 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005231_tree ,
OG_02_0006383 (LandPlants) Phylogenetic Tree(s): OG_02_0006383_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Pp3c5_28430V3.1 | |
Cluster | HCCA: Cluster_229 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G03920 | No alias | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein | 0.24 | Archaeplastida | |
Cpa|evm.model.tig00000310.30 | No alias | RNA processing.RNA modification.pseudouridylation.H/ACA... | 0.02 | Archaeplastida | |
Cre13.g567850 | No alias | RNA processing.RNA modification.pseudouridylation.H/ACA... | 0.03 | Archaeplastida | |
GSVIVT01033401001 | No alias | RNA processing.RNA modification.pseudouridylation.H/ACA... | 0.13 | Archaeplastida | |
Gb_17575 | No alias | core component Gar1 of H/ACA small nucleolar... | 0.03 | Archaeplastida | |
Gb_24533 | No alias | core component Gar1 of H/ACA small nucleolar... | 0.03 | Archaeplastida | |
LOC_Os11g37080.1 | No alias | core component Gar1 of H/ACA small nucleolar... | 0.12 | Archaeplastida | |
Mp5g08210.1 | No alias | core component Gar1 of H/ACA small nucleolar... | 0.03 | Archaeplastida | |
Smo266974 | No alias | RNA processing.RNA modification.pseudouridylation.H/ACA... | 0.09 | Archaeplastida | |
Solyc10g078540.3.1 | No alias | core component Gar1 of H/ACA small nucleolar... | 0.23 | Archaeplastida | |
Zm00001e011244_P001 | No alias | core component Gar1 of H/ACA small nucleolar... | 0.03 | Archaeplastida | |
Zm00001e024449_P002 | No alias | core component Gar1 of H/ACA small nucleolar... | 0.03 | Archaeplastida | |
AT3G03920 | No alias | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein | 0.22 | LandPlants | |
GSVIVT01033401001 | No alias | RNA processing.RNA modification.pseudouridylation.H/ACA... | 0.12 | LandPlants | |
Gb_17575 | No alias | core component Gar1 of H/ACA small nucleolar... | 0.02 | LandPlants | |
LOC_Os11g37080.1 | No alias | core component Gar1 of H/ACA small nucleolar... | 0.1 | LandPlants | |
Mp5g08210.1 | No alias | core component Gar1 of H/ACA small nucleolar... | 0.02 | LandPlants | |
Smo266974 | No alias | RNA processing.RNA modification.pseudouridylation.H/ACA... | 0.08 | LandPlants | |
Solyc10g078540.3.1 | No alias | core component Gar1 of H/ACA small nucleolar... | 0.2 | LandPlants | |
Zm00001e024449_P002 | No alias | core component Gar1 of H/ACA small nucleolar... | 0.02 | LandPlants |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | Interproscan |
BP | GO:0042254 | ribosome biogenesis | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007504 | H/ACA_rnp_Gar1/Naf1 | 38 | 136 |
No external refs found! |