Solyc03g123620.4.1 (Solyc03g123620.4)


Aliases : Solyc03g123620.4

Description : 10.8.1 cell wall.pectin*esterases.PME encodes a pectin methylesterase pectin methylesterase 1 (PME1)


Gene families : OG_01_0000075 (Gene family) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc03g123620.4.1
Cluster HCCA cluster: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AT1G53830 ATPME2, PME2 pectin methylesterase 2 0.03 Gene family
AT1G53840 PME1, ATPME1 pectin methylesterase 1 0.03 Gene family
AT2G26450 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Gene family
AT3G47400 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Gene family
AT4G33230 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Gene family
AT5G53370 ATPMEPCRF, PMEPCRF pectin methylesterase PCR fragment F 0.02 Gene family
GSVIVT01015000001 No alias 10.8.1 cell wall.pectin*esterases.PME Plant... 0.03 Gene family
GSVIVT01016667001 No alias 10.8.1 cell wall.pectin*esterases.PME encodes a pectin... 0.03 Gene family
GSVIVT01018622001 No alias 10.8.99 cell wall.pectin*esterases.misc Plant... 0.03 Gene family
GSVIVT01027652001 No alias 10.8.99 cell wall.pectin*esterases.misc Plant... 0.02 Gene family
GSVIVT01028264001 No alias 10.8.1 cell wall.pectin*esterases.PME Plant... 0.02 Gene family
GSVIVT01031667001 No alias 10.8.99 cell wall.pectin*esterases.misc pectin... 0.02 Gene family
GSVIVT01037348001 No alias 10.8.99 cell wall.pectin*esterases.misc Plant... 0.02 Gene family
GSVIVT01037349001 No alias 10.8.99 cell wall.pectin*esterases.misc Plant... 0.03 Gene family
GSVIVT01038546001 No alias 10.8.1 cell wall.pectin*esterases.PME Plant... 0.06 Gene family
LOC_Os01g57854 Os01g0788400 10.8.1 cell wall.pectin*esterases.PME methylesterase PCR... 0.03 Gene family
LOC_Os04g38560 Os04g0458900 10.8.1 cell wall.pectin*esterases.PME Plant... 0.03 Gene family
LOC_Os06g09340 Os06g0193200 10.8.1 cell wall.pectin*esterases.PME Plant... 0.02 Gene family
LOC_Os08g34910 Os08g0449901,... 10.8.1 cell wall.pectin*esterases.PME Plant... 0.03 Gene family
LOC_Os09g26360 Os09g0433700 10.8.1 cell wall.pectin*esterases.PME Plant... 0.03 Gene family
MA_177306g0010 No alias 10.8.1 cell wall.pectin*esterases.PME encodes a pectin... 0.02 Gene family
Solyc01g068120.3.1 Solyc01g068120.3 10.8.1 cell wall.pectin*esterases.PME VGDH1 0.03 Gene family
Solyc01g099960.3.1 Solyc01g099960.3 10.8.1 cell wall.pectin*esterases.PME Plant... 0.03 Gene family
Zm00001d003431 GRMZM2G012328 10.8.1 cell wall.pectin*esterases.PME Plant... 0.02 Gene family
Zm00001d005792 GRMZM2G060400 10.8.1 cell wall.pectin*esterases.PME Plant... 0.02 Gene family
Zm00001d008334 GRMZM2G017555 10.8.1 cell wall.pectin*esterases.PME Plant... 0.02 Gene family
Zm00001d015934 GRMZM2G008593 10.8.1 cell wall.pectin*esterases.PME Plant... 0.01 Gene family
Zm00001d020586 GRMZM2G137676 10.8.1 cell wall.pectin*esterases.PME Plant... 0.02 Gene family
Zm00001d022460 GRMZM2G025182 10.8.99 cell wall.pectin*esterases.misc Plant... 0.03 Gene family
Zm00001d025588 GRMZM2G125356 10.8.1 cell wall.pectin*esterases.PME Encodes a putative... 0.02 Gene family
Zm00001d032100 GRMZM2G043415 10.8.1 cell wall.pectin*esterases.PME Plant... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 260 553
IPR006501 Pectinesterase_inhib_dom 68 215
No external refs found!