AMTR_s00121p00130180 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00121.38

Description : RNA processing.RNA quality control Exon Junction complex (EJC).core components.Magoh component


Gene families : OG_01_0004894 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004894_tree ,
OG_02_0005301 (LandPlants) Phylogenetic Tree(s): OG_02_0005301_tree ,
OG_03_0007954 (SeedPlants) Phylogenetic Tree(s): OG_03_0007954_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00121p00130180
Cluster HCCA: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
AT1G02140 HAP1, MEE63, MAGO mago nashi family protein 0.01 Archaeplastida
Cpa|evm.model.tig00000944.21 No alias RNA processing.RNA quality control Exon Junction complex... 0.03 Archaeplastida
Cre09.g392692 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 Archaeplastida
LOC_Os08g01660.1 No alias component Magoh of RNA quality control Exon Junction complex 0.04 Archaeplastida
LOC_Os12g18880.1 No alias component Magoh of RNA quality control Exon Junction complex 0.02 Archaeplastida
MA_10426266g0010 No alias component Magoh of RNA quality control Exon Junction complex 0.02 Archaeplastida
Mp5g13520.1 No alias component Magoh of RNA quality control Exon Junction complex 0.02 Archaeplastida
Pp3c1_16440V3.1 No alias mago nashi family protein 0.03 Archaeplastida
Pp3c2_21720V3.1 No alias mago nashi family protein 0.03 Archaeplastida
Solyc03g093680.4.1 No alias component Magoh of RNA quality control Exon Junction complex 0.04 Archaeplastida
AT1G02140 HAP1, MEE63, MAGO mago nashi family protein 0.01 LandPlants
LOC_Os08g01660.1 No alias component Magoh of RNA quality control Exon Junction complex 0.03 LandPlants
LOC_Os12g18880.1 No alias component Magoh of RNA quality control Exon Junction complex 0.02 LandPlants
MA_10426266g0010 No alias component Magoh of RNA quality control Exon Junction complex 0.02 LandPlants
Mp5g13520.1 No alias component Magoh of RNA quality control Exon Junction complex 0.02 LandPlants
Pp3c1_16440V3.1 No alias mago nashi family protein 0.02 LandPlants
Pp3c2_21720V3.1 No alias mago nashi family protein 0.03 LandPlants
Solyc03g093680.4.1 No alias component Magoh of RNA quality control Exon Junction complex 0.04 LandPlants
AT1G02140 HAP1, MEE63, MAGO mago nashi family protein 0.01 SeedPlants
LOC_Os08g01660.1 No alias component Magoh of RNA quality control Exon Junction complex 0.03 SeedPlants
LOC_Os12g18880.1 No alias component Magoh of RNA quality control Exon Junction complex 0.02 SeedPlants
MA_10426266g0010 No alias component Magoh of RNA quality control Exon Junction complex 0.02 SeedPlants
Solyc03g093680.4.1 No alias component Magoh of RNA quality control Exon Junction complex 0.04 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004023 Mago_nashi 9 120
No external refs found!