Solyc03g119950.1.1 (Solyc03g119950.1)

Aliases : Solyc03g119950.1

Description : 35.1.5 not ontology.pentatricopeptide (PPR) repeat-containing protein Encodes a pentatricopeptide repeat protein required for chloroplast transcript accD RNA editing and early chloroplast biogenesis. EARLY CHLOROPLAST BIOGENESIS2 (ECB2)

Gene families : OG_01_0008957 (Gene family) Phylogenetic Tree(s): OG0008957_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc03g119950.1.1
Cluster HCCA cluster: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.19 Gene family
GSVIVT01017209001 No alias 35.1.5 not ontology.pentatricopeptide (PPR)... 0.15 Gene family
LOC_Os05g49920 Os05g0574800 35.1.5 not ontology.pentatricopeptide (PPR)... 0.11 Gene family
MA_27726g0010 No alias 35.1.5 not ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d039096 GRMZM2G455587 35.1.5 not ontology.pentatricopeptide (PPR)... 0.16 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032867 DYW_dom 738 861
IPR002885 Pentatricopeptide_repeat 163 209
IPR002885 Pentatricopeptide_repeat 364 411
IPR002885 Pentatricopeptide_repeat 565 612
IPR002885 Pentatricopeptide_repeat 264 310
IPR002885 Pentatricopeptide_repeat 440 466
IPR002885 Pentatricopeptide_repeat 237 263
IPR002885 Pentatricopeptide_repeat 713 734
IPR002885 Pentatricopeptide_repeat 468 496
No external refs found!