Pp3c5_15220V3.1


Description : RNA polymerase I subunit 43


Gene families : OG_01_0004769 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004769_tree ,
OG_02_0005126 (LandPlants) Phylogenetic Tree(s): OG_02_0005126_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c5_15220V3.1
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020848.19 No alias DNA-directed RNA polymerases II, IV and V subunit 3... 0.04 Archaeplastida
Cre07.g313302 No alias DNA-directed RNA polymerases IV and V subunit 3B... 0.02 Archaeplastida
GSVIVT01014713001 No alias DNA-directed RNA polymerases IV and V subunit 3B... 0.02 Archaeplastida
LOC_Os03g18410.1 No alias DNA-directed RNA polymerases II, IV and V subunit 3... 0.07 Archaeplastida
MA_842965g0020 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc12g015780.2.1 No alias DNA-directed RNA polymerases II, IV and V subunit 3... 0.04 Archaeplastida
GSVIVT01014713001 No alias DNA-directed RNA polymerases IV and V subunit 3B... 0.02 LandPlants
LOC_Os03g18410.1 No alias DNA-directed RNA polymerases II, IV and V subunit 3... 0.06 LandPlants
MA_842965g0020 No alias no hits & (original description: none) 0.02 LandPlants
Mp6g21330.1 No alias DNA-directed RNA polymerases II, IV and V subunit 3... 0.01 LandPlants
Solyc12g015780.2.1 No alias DNA-directed RNA polymerases II, IV and V subunit 3... 0.04 LandPlants

Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011263 DNA-dir_RNA_pol_RpoA/D/Rpb3 74 352
IPR011262 DNA-dir_RNA_pol_insert 104 245
No external refs found!