Solyc03g116843.1.1 (Solyc03g116843.1)


Aliases : Solyc03g116843.1

Description : No description available


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc03g116843.1.1
Cluster HCCA cluster: Cluster_288

Target Alias Description ECC score Gene Family Method Actions
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Gene family
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT2G01510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.12 Gene family
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT3G15930 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Gene family
AT3G25060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT4G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
GSVIVT01000086001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01000420001 No alias No description available 0.03 Gene family
GSVIVT01010654001 No alias No description available 0.07 Gene family
GSVIVT01017763001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01028022001 No alias No description available 0.08 Gene family
GSVIVT01033304001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01036943001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os01g01115 Os01g0101150 No description available 0.02 Gene family
LOC_Os01g15530 Os01g0260000 No description available 0.04 Gene family
LOC_Os01g19380 Os01g0299150,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os02g44480 Os02g0663900 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os03g08680 Os03g0185200 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os03g16450 Os03g0271300 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
LOC_Os03g60690 Os03g0821700 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os04g43430 Os04g0514500 No description available 0.05 Gene family
LOC_Os05g05490 Os05g0147600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os05g33920 Os05g0409800 No description available 0.03 Gene family
LOC_Os06g02200 Os06g0112000 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os11g45410 Os11g0679900,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os12g01850 Os12g0109300 No description available 0.02 Gene family
MA_10164206g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_10429540g0020 No alias No description available 0.07 Gene family
MA_122899g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_177435g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_20599g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.08 Gene family
MA_20899g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_2991g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_30949g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
MA_3317g0020 No alias No description available 0.03 Gene family
MA_34492g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_3449g0010 No alias No description available 0.02 Gene family
MA_36655g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_483636g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
MA_59148g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_61422g0020 No alias No description available 0.03 Gene family
MA_65500g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_83898g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_9258g0010 No alias No description available 0.05 Gene family
MA_97789g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Smo83034 PACid_15411135 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo89588 PACid_15410271 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc02g079380.2.1 Solyc02g079380.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc03g093630.2.1 Solyc03g093630.2 No description available 0.02 Gene family
Solyc03g111210.3.1 Solyc03g111210.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc11g008940.1.1 Solyc11g008940.1 No description available 0.02 Gene family
Zm00001d005149 GRMZM2G138303 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d013941 GRMZM2G073017 No description available 0.03 Gene family
Zm00001d016473 GRMZM2G328961 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d017518 GRMZM2G014977 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d028587 GRMZM5G836424 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Zm00001d030143 GRMZM2G430710 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d033495 GRMZM5G849971 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
Zm00001d036833 GRMZM5G811022 No description available 0.04 Gene family
Zm00001d042039 GRMZM2G060536 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d043068 GRMZM2G399433 No description available 0.06 Gene family
Zm00001d043081 GRMZM2G350410 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d043107 GRMZM2G456114 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.11 Gene family
Zm00001d050938 GRMZM2G163396 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
Zm00001d051576 GRMZM2G110483 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Zm00001d051816 GRMZM2G029859 No description available 0.02 Gene family
Zm00001d052794 GRMZM2G140600 No description available 0.06 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 187 206
IPR002885 Pentatricopeptide_repeat 419 444
IPR002885 Pentatricopeptide_repeat 287 313
IPR002885 Pentatricopeptide_repeat 315 343
IPR002885 Pentatricopeptide_repeat 445 491
IPR002885 Pentatricopeptide_repeat 111 158
IPR002885 Pentatricopeptide_repeat 344 391
IPR002885 Pentatricopeptide_repeat 212 259
IPR032867 DYW_dom 618 741
IPR002885 Pentatricopeptide_repeat 512 543
No external refs found!