Solyc03g113870.1.1 (Solyc03g113870.1)


Aliases : Solyc03g113870.1

Description : 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. plant U-box 38 (PUB38)


Gene families : OG_01_0002750 (Gene family) Phylogenetic Tree(s): OG0002750_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc03g113870.1.1
Cluster HCCA cluster: Cluster_289

Target Alias Description ECC score Gene Family Method Actions
LOC_Os06g13080 Os06g0238000 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING PLANT... 0.03 Gene family
Smo90666 PACid_15414232 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
Zm00001d020358 GRMZM2G100090 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan
BP GO:0016567 protein ubiquitination IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000225 Armadillo 304 340
IPR003613 Ubox_domain 39 107
No external refs found!