Solyc03g111840.3.1 (Solyc03g111840.3)


Aliases : Solyc03g111840.3

Description : 27.4 RNA.RNA binding Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Required for editing and stability of specific chloroplast mRNAs. 31-kDa RNA binding protein (RBP31)


Gene families : OG_01_0003760 (Gene family) Phylogenetic Tree(s): OG0003760_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc03g111840.3.1
Cluster HCCA cluster: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
AT4G24770 ATRBP31, CP31,... 31-kDa RNA binding protein 0.29 Gene family
GSVIVT01007596001 No alias 27.4 RNA.RNA binding Encodes a chloroplast RNA-binding... 0.13 Gene family
GSVIVT01032361001 No alias 27.4 RNA.RNA binding Encodes a chloroplast RNA-binding... 0.22 Gene family
LOC_Os08g44290 Os08g0557100 27.4 RNA.RNA binding Encodes a chloroplast RNA-binding... 0.06 Gene family
LOC_Os09g39180 Os09g0565200 27.4 RNA.RNA binding Encodes a chloroplast RNA-binding... 0.05 Gene family
MA_474396g0010 No alias 27.4 RNA.RNA binding Encodes a chloroplast RNA-binding... 0.07 Gene family
Zm00001d019648 GRMZM2G011129 27.4 RNA.RNA binding Encodes a chloroplast RNA-binding... 0.18 Gene family
Zm00001d031969 GRMZM2G158462 27.4 RNA.RNA binding Encodes a chloroplast RNA-binding... 0.08 Gene family
Zm00001d049965 GRMZM2G123234 27.4 RNA.RNA binding Encodes a chloroplast RNA-binding... 0.12 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 119 188
IPR000504 RRM_dom 213 283
No external refs found!