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  5. Aev_g39464

Aev_g39464 (HTA6)


Aliases : HTA6

Description : histone *(H2A) & original description: none


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g39464

Target Alias Description ECC score Gene Family Method Actions
AT5G54640 RAT5, HTA1, ATHTA1 Histone superfamily protein 0.02 OrthoFinder output from all 47 species
Als_g42846 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02581 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g33311 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001085.4 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder output from all 47 species
Dcu_g31059 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12273 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_07185 GAMMA-H2AX,... histone (H2A) 0.04 OrthoFinder output from all 47 species
Nbi_g06551 HTA7 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g09403 HTA7 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27681 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g58817 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10950 HTA6 histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g33608 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43135 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000823 GAMMA-H2AX,... histone *(H2A) & original description: CDS=1-471 0.02 OrthoFinder output from all 47 species
Zm00001e010516_P001 RAT5, HTA1,... histone (H2A) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 100 133
IPR007125 Histone_H2A/H2B/H3 17 97
No external refs found!