Solyc03g058920.3.1 (Solyc03g058920.3)

Aliases : Solyc03g058920.3

Description : 34.20 transport.porins Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol. voltage dependent anion channel 1 (VDAC1)

Gene families : OG_01_0000402 (Gene family) Phylogenetic Tree(s): OG0000402_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): Solyc03g058920.3.1
Cluster	HCCA cluster: Cluster_159

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01011346001	No alias	34.20 transport.porins Encodes a voltage-dependent anion...	0.02	Gene family
LOC_Os01g40570	Os01g0588200	34.20 transport.porins Encodes a voltage-dependent anion...	0.02	Gene family
LOC_Os03g04460	Os03g0137500	34.18 transport.unspecified anions Encodes a...	0.02	Gene family
LOC_Os03g10510	Os03g0202200	34.20 transport.porins Encodes a voltage-dependent anion...	0.02	Gene family
Smo143103	PACid_15413197	No description available	0.02	Gene family
Zm00001d020219	GRMZM2G146670	34.20 transport.porins Encodes a voltage-dependent anion...	0.04	Gene family
Zm00001d028102	GRMZM2G055025	34.20 transport.porins Encodes a voltage-dependent anion...	0.01	Gene family

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005741	mitochondrial outer membrane	IEA	InterProScan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0019867	outer membrane	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031966	mitochondrial membrane	None	Extended
CC	GO:0031968	organelle outer membrane	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044429	mitochondrial part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	InterProScan
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098805	whole membrane	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR027246	Porin_Euk/Tom40	67	331

External Links

No external refs found!

Solyc03g058920.3.1 (Solyc03g058920.3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation