Solyc03g058890.3.1 (Solyc03g058890.3)


Aliases : Solyc03g058890.3

Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases AT59


Gene families : OG_01_0000238 (Gene family) Phylogenetic Tree(s): OG0000238_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc03g058890.3.1
Cluster HCCA cluster: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AT1G14420 AT59 Pectate lyase family protein 0.09 Gene family
AT2G02720 No alias Pectate lyase family protein 0.11 Gene family
AT3G01270 No alias Pectate lyase family protein 0.05 Gene family
AT3G24670 No alias Pectin lyase-like superfamily protein 0.02 Gene family
AT5G15110 No alias Pectate lyase family protein 0.1 Gene family
GSVIVT01008053001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.1 Gene family
GSVIVT01011348001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.06 Gene family
GSVIVT01020067001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.11 Gene family
GSVIVT01020068001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.12 Gene family
LOC_Os02g12300 Os02g0214400 10.6.3 cell wall.degradation.pectate lyases and... 0.05 Gene family
LOC_Os06g05209 Os06g0144200 10.6.3 cell wall.degradation.pectate lyases and... 0.09 Gene family
LOC_Os06g05260 Os06g0144900 10.6.3 cell wall.degradation.pectate lyases and... 0.08 Gene family
LOC_Os06g05272 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.07 Gene family
LOC_Os06g38510 Os06g0583900 10.6.3 cell wall.degradation.pectate lyases and... 0.05 Gene family
Smo407495 PACid_15419124 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc02g093580.3.1 Solyc02g093580.3 10.6.3 cell wall.degradation.pectate lyases and... 0.05 Gene family
Solyc03g113150.3.1 Solyc03g113150.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc09g061890.3.1 Solyc09g061890.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d000216 GRMZM2G323418 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Zm00001d036158 GRMZM2G364349 10.6.3 cell wall.degradation.pectate lyases and... 0.09 Gene family

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007524 Pec_lyase_N 27 87
IPR002022 Pec_lyase 185 364
No external refs found!