Pp3c3_29710V3.1


Description : RNA polymerase II large subunit


Gene families : OG_01_0009277 (Archaeplastida) Phylogenetic Tree(s): OG_01_0009277_tree ,
OG_02_0009142 (LandPlants) Phylogenetic Tree(s): OG_02_0009142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c3_29710V3.1
Cluster HCCA: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_11520V3.1 No alias nuclear RNA polymerase A1 0.04 Archaeplastida
Pp3c17_12280V3.1 No alias nuclear RNA polymerase C1 0.02 Archaeplastida
Pp3c25_15150V3.1 No alias nuclear RNA polymerase A1 0.03 Archaeplastida
Pp3c2_30110V3.1 No alias No annotation 0.06 Archaeplastida
Pp3c3_35870V3.1 No alias nuclear RNA polymerase C1 0.06 Archaeplastida
Pp3c4_14790V3.1 No alias nuclear RNA polymerase C1 0.05 Archaeplastida
Pp3c9_12661V3.1 No alias nuclear RNA polymerase A1 0.05 Archaeplastida
Pp3c9_12700V3.1 No alias nuclear RNA polymerase A1 0.02 Archaeplastida
Pp3c9_17770V3.1 No alias nuclear RNA polymerase C1 0.05 Archaeplastida
Pp3c9_17780V3.1 No alias nuclear RNA polymerase C1 0.05 Archaeplastida
Pp3c10_11520V3.1 No alias nuclear RNA polymerase A1 0.04 LandPlants
Pp3c17_12280V3.1 No alias nuclear RNA polymerase C1 0.02 LandPlants
Pp3c25_15150V3.1 No alias nuclear RNA polymerase A1 0.03 LandPlants
Pp3c2_30110V3.1 No alias No annotation 0.06 LandPlants
Pp3c3_35870V3.1 No alias nuclear RNA polymerase C1 0.06 LandPlants
Pp3c4_14790V3.1 No alias nuclear RNA polymerase C1 0.05 LandPlants
Pp3c9_12661V3.1 No alias nuclear RNA polymerase A1 0.05 LandPlants
Pp3c9_12700V3.1 No alias nuclear RNA polymerase A1 0.02 LandPlants
Pp3c9_17770V3.1 No alias nuclear RNA polymerase C1 0.05 LandPlants
Pp3c9_17780V3.1 No alias nuclear RNA polymerase C1 0.05 LandPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 17 107
No external refs found!