Solyc03g019780.3.1 (Solyc03g019780.3)

Aliases : Solyc03g019780.3

Description : protein.synthesis.ribosomal protein.eukaryotic.40S subunit.SA acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue. 40s ribosomal protein SA (P40)

Gene families : OG_01_0002645 (Gene family) Phylogenetic Tree(s): OG0002645_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc03g019780.3.1
Cluster HCCA cluster: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AT1G72370 P40, AP40, RPSAA, RP40 40s ribosomal protein SA 0.41 Gene family
Cre10.g432800 No alias protein.synthesis.ribosomal... 0.17 Gene family
GSVIVT01016695001 No alias protein.synthesis.ribosomal... 0.29 Gene family
LOC_Os03g08440 Os03g0182600 protein.synthesis.ribosomal... 0.11 Gene family
LOC_Os07g42450 Os07g0616600 protein.synthesis.ribosomal... 0.28 Gene family
MA_10436984g0020 No alias protein.synthesis.ribosomal... 0.03 Gene family
MA_112104g0010 No alias protein.synthesis.ribosomal... 0.07 Gene family
Smo36118 PACid_15406812 No description available 0.02 Gene family
Zm00001d006871 GRMZM2G159237 protein.synthesis.ribosomal... 0.33 Gene family
Zm00001d027527 GRMZM2G092719 protein.synthesis.ribosomal... 0.32 Gene family
Zm00001d048253 GRMZM2G099657 protein.synthesis.ribosomal... 0.26 Gene family
Zm00001d048346 GRMZM2G126821 protein.synthesis.ribosomal... 0.35 Gene family

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan
CC GO:0005622 intracellular IEA InterProScan
CC GO:0005840 ribosome IEA InterProScan
BP GO:0006412 translation IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 119 185
IPR001865 Ribosomal_S2 21 116
No external refs found!