Aev_g38215 (TAF4, TAF4B)

Aliases : TAF4, TAF4B

Description : component *(TAF4) of TFIId basal transcription regulation complex & original description: none

Gene families : OG0002362 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002362_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aev_g38215
Cluster	HCCA: Cluster_123

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00199670	TAF4, TAF4B,...	RNA biosynthesis.RNA polymerase II-dependent...	0.05	OrthoFinder output from all 47 species
Als_g10535	TAF4, TAF4B	component *(TAF4) of TFIId basal transcription...	0.02	OrthoFinder output from all 47 species
Aob_g42043	TAF4, TAF4B	component *(TAF4) of TFIId basal transcription...	0.04	OrthoFinder output from all 47 species
Aop_g08190	TAF4, TAF4B	component *(TAF4) of TFIId basal transcription...	0.04	OrthoFinder output from all 47 species
Ceric.35G034700.1	TAF4, TAF4B,...	component *(TAF4) of TFIId basal transcription...	0.04	OrthoFinder output from all 47 species
Dcu_g42653	TAF4, TAF4B	component *(TAF4) of TFIId basal transcription...	0.02	OrthoFinder output from all 47 species
GSVIVT01009365001	TAF4, TAF4B	RNA biosynthesis.RNA polymerase II-dependent...	0.05	OrthoFinder output from all 47 species
MA_168127g0010	TAF4, TAF4B	component TAF4 of TFIId basal transcription regulation complex	0.04	OrthoFinder output from all 47 species
Mp2g09230.1	TAF4, TAF4B	component TAF4 of TFIId basal transcription regulation complex	0.05	OrthoFinder output from all 47 species
Pir_g57970	TAF4, TAF4B	component *(TAF4) of TFIId basal transcription...	0.03	OrthoFinder output from all 47 species
Solyc04g078050.3.1	TAF4, TAF4B,...	component TAF4 of TFIId basal transcription regulation complex	0.04	OrthoFinder output from all 47 species
Spa_g50299	TAF4, TAF4B	component *(TAF4) of TFIId basal transcription...	0.03	OrthoFinder output from all 47 species
Zm00001e002074_P001	TAF4, TAF4B,...	component TAF4 of TFIId basal transcription regulation complex	0.02	OrthoFinder output from all 47 species
Zm00001e016810_P001	TAF4, TAF4B,...	component TAF4 of TFIId basal transcription regulation complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005669	transcription factor TFIID complex	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006476	protein deacetylation	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016575	histone deacetylation	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
BP	GO:0035601	protein deacylation	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0098732	macromolecule deacylation	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022003	RST	147	209
IPR007900	TAF4_C	732	1045

External Links

No external refs found!

Aev_g38215 (TAF4, TAF4B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation