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  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g005520.1.1

Solyc03g005520.1.1 (Solyc03g005520.1)


Aliases : Solyc03g005520.1

Description : No description available


Gene families : OG_01_0000000 (Gene family) Phylogenetic Tree(s): OG0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc03g005520.1.1
Cluster HCCA cluster: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AT1G06160 ORA59 octadecanoid-responsive Arabidopsis AP2/ERF 59 0.02 Gene family
AT1G22810 No alias Integrase-type DNA-binding superfamily protein 0.03 Gene family
AT1G28370 ATERF11, ERF11 ERF domain protein 11 0.04 Gene family
AT1G33760 No alias Integrase-type DNA-binding superfamily protein 0.05 Gene family
AT1G71520 No alias Integrase-type DNA-binding superfamily protein 0.03 Gene family
AT1G77640 No alias Integrase-type DNA-binding superfamily protein 0.05 Gene family
AT2G22200 No alias Integrase-type DNA-binding superfamily protein 0.04 Gene family
AT2G25820 No alias Integrase-type DNA-binding superfamily protein 0.03 Gene family
AT2G35700 ERF38, ATERF38 ERF family protein 38 0.03 Gene family
AT2G44840 ATERF13, ERF13, EREBP ethylene-responsive element binding factor 13 0.04 Gene family
AT3G23220 No alias Integrase-type DNA-binding superfamily protein 0.05 Gene family
AT3G23230 No alias Integrase-type DNA-binding superfamily protein 0.04 Gene family
AT3G23240 ERF1, ATERF1 ethylene response factor 1 0.03 Gene family
AT4G17490 ERF-6-6, ERF6, ATERF6 ethylene responsive element binding factor 6 0.07 Gene family
AT4G17500 ERF-1, ATERF-1 ethylene responsive element binding factor 1 0.04 Gene family
AT4G34410 RRTF1 redox responsive transcription factor 1 0.04 Gene family
AT4G39780 No alias Integrase-type DNA-binding superfamily protein 0.02 Gene family
AT5G07310 No alias Integrase-type DNA-binding superfamily protein 0.02 Gene family
AT5G51190 No alias Integrase-type DNA-binding superfamily protein 0.05 Gene family
AT5G61890 No alias Integrase-type DNA-binding superfamily protein 0.02 Gene family
GSVIVT01008649001 No alias No description available 0.04 Gene family
GSVIVT01013917001 No alias No description available 0.03 Gene family
GSVIVT01013923001 No alias No description available 0.03 Gene family
GSVIVT01015037001 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.03 Gene family
GSVIVT01018271001 No alias No description available 0.02 Gene family
GSVIVT01018272001 No alias 17.5.2 hormone metabolism.ethylene.signal transduction... 0.02 Gene family
GSVIVT01019519001 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
GSVIVT01021098001 No alias No description available 0.03 Gene family
GSVIVT01021146001 No alias No description available 0.02 Gene family
GSVIVT01022277001 No alias No description available 0.03 Gene family
GSVIVT01027770001 No alias No description available 0.03 Gene family
GSVIVT01028314001 No alias No description available 0.02 Gene family
GSVIVT01028315001 No alias No description available 0.03 Gene family
GSVIVT01031747001 No alias 17.5.2 hormone metabolism.ethylene.signal transduction... 0.03 Gene family
GSVIVT01032983001 No alias No description available 0.04 Gene family
GSVIVT01034563001 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.04 Gene family
GSVIVT01035502001 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.05 Gene family
GSVIVT01036388001 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
GSVIVT01036389001 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
LOC_Os02g32140 Os02g0521100 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.04 Gene family
LOC_Os02g42585 Os02g0638650 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.03 Gene family
LOC_Os02g52670 Os02g0764700 No description available 0.02 Gene family
LOC_Os03g08490 Os03g0183200 No description available 0.03 Gene family
LOC_Os04g32620 Os04g0398000 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.03 Gene family
LOC_Os04g52090 Os04g0610400 No description available 0.04 Gene family
LOC_Os04g57340 Os04g0669200 17.5.2 hormone metabolism.ethylene.signal transduction... 0.05 Gene family
LOC_Os06g11860 Os06g0222400 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.03 Gene family
LOC_Os06g47590 Os06g0691100 No description available 0.03 Gene family
LOC_Os07g22730 Os07g0410300 No description available 0.03 Gene family
LOC_Os07g42510 Os07g0617000 No description available 0.02 Gene family
LOC_Os08g44960 No alias 17.5.3 hormone... 0.02 Gene family
LOC_Os09g13940 Os09g0309700 No description available 0.02 Gene family
LOC_Os10g41130 Os10g0560700 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
LOC_Os10g41330 Os10g0562900 No description available 0.03 Gene family
MA_10274g0010 No alias No description available 0.02 Gene family
MA_132427g0010 No alias No description available 0.02 Gene family
MA_168025g0010 No alias No description available 0.02 Gene family
MA_2407076g0010 No alias 17.5.2 hormone metabolism.ethylene.signal transduction... 0.03 Gene family
MA_314205g0010 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.03 Gene family
MA_40048g0010 No alias No description available 0.02 Gene family
MA_8384767g0010 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
MA_9565296g0010 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.03 Gene family
MA_9905g0010 No alias No description available 0.03 Gene family
Solyc01g057080.1.1 Solyc01g057080.1 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.03 Gene family
Solyc01g090370.2.1 Solyc01g090370.2 No description available 0.02 Gene family
Solyc01g108240.3.1 Solyc01g108240.3 No description available 0.02 Gene family
Solyc02g067020.1.1 Solyc02g067020.1 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.03 Gene family
Solyc04g007170.3.1 Solyc04g007170.3 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.03 Gene family
Solyc04g012050.3.1 Solyc04g012050.3 No description available 0.05 Gene family
Solyc06g065820.3.1 Solyc06g065820.3 No description available 0.02 Gene family
Solyc12g042210.2.1 Solyc12g042210.2 No description available 0.03 Gene family
Zm00001d000339 GRMZM2G174347 No description available 0.02 Gene family
Zm00001d014113 GRMZM2G024871 17.5.3 hormone... 0.04 Gene family
Zm00001d017462 GRMZM2G466044 17.5.2 hormone metabolism.ethylene.signal transduction... 0.02 Gene family
Zm00001d019475 No alias No description available 0.02 Gene family
Zm00001d038446 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
Zm00001d038585 GRMZM2G020150 No description available 0.02 Gene family
Zm00001d039324 GRMZM2G142179 No description available 0.02 Gene family
Zm00001d042593 GRMZM2G307152 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
Zm00001d043491 GRMZM2G474326 No description available 0.03 Gene family
Zm00001d044857 GRMZM5G852704 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
Zm00001d044950 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.03 Gene family
Zm00001d049058 GRMZM2G073258,... No description available 0.04 Gene family
Zm00001d052167 GRMZM2G173771 No description available 0.03 Gene family
Zm00001d052229 GRMZM2G029323 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.03 Gene family
Zm00001d053195 GRMZM2G076896 No description available 0.02 Gene family
Zm00001d053859 GRMZM2G052720 No description available 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 62 112
No external refs found!