Solyc02g094480.3.1 (Solyc02g094480.3)


Aliases : Solyc02g094480.3

Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc02g094480.3.1
Cluster HCCA cluster: Cluster_288

Target Alias Description ECC score Gene Family Method Actions
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Gene family
AT1G17630 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Gene family
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Gene family
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Gene family
AT2G01510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT2G27610 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT2G39620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Gene family
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Gene family
AT3G15930 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT4G21065 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT4G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Gene family
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
GSVIVT01000086001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01000244001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01000420001 No alias No description available 0.04 Gene family
GSVIVT01000968001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
GSVIVT01008173001 No alias No description available 0.02 Gene family
GSVIVT01010654001 No alias No description available 0.13 Gene family
GSVIVT01011735001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01015325001 No alias No description available 0.05 Gene family
GSVIVT01017378001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01017763001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.13 Gene family
GSVIVT01021023001 No alias No description available 0.02 Gene family
GSVIVT01024493001 No alias No description available 0.03 Gene family
GSVIVT01027504001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.08 Gene family
GSVIVT01028022001 No alias No description available 0.11 Gene family
GSVIVT01032394001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
GSVIVT01033304001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01033837001 No alias No description available 0.04 Gene family
GSVIVT01035618001 No alias No description available 0.04 Gene family
GSVIVT01036511001 No alias No description available 0.02 Gene family
GSVIVT01036943001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
LOC_Os01g01115 Os01g0101150 No description available 0.02 Gene family
LOC_Os01g19380 Os01g0299150,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os02g44480 Os02g0663900 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os03g08680 Os03g0185200 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os03g16450 Os03g0271300 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.1 Gene family
LOC_Os03g60690 Os03g0821700 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os04g43430 Os04g0514500 No description available 0.06 Gene family
LOC_Os05g05490 Os05g0147600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os06g02200 Os06g0112000 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os11g45410 Os11g0679900,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os12g01850 Os12g0109300 No description available 0.03 Gene family
Solyc02g079380.2.1 Solyc02g079380.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc03g093630.2.1 Solyc03g093630.2 No description available 0.02 Gene family
Solyc03g111210.3.1 Solyc03g111210.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc11g008940.1.1 Solyc11g008940.1 No description available 0.03 Gene family
Zm00001d005149 GRMZM2G138303 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d013941 GRMZM2G073017 No description available 0.04 Gene family
Zm00001d016473 GRMZM2G328961 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d028587 GRMZM5G836424 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.08 Gene family
Zm00001d033495 GRMZM5G849971 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.09 Gene family
Zm00001d036833 GRMZM5G811022 No description available 0.05 Gene family
Zm00001d043068 GRMZM2G399433 No description available 0.08 Gene family
Zm00001d043081 GRMZM2G350410 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d051576 GRMZM2G110483 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 30 76
IPR002885 Pentatricopeptide_repeat 334 381
IPR032867 DYW_dom 508 632
IPR002885 Pentatricopeptide_repeat 235 259
IPR002885 Pentatricopeptide_repeat 133 158
IPR002885 Pentatricopeptide_repeat 105 131
IPR002885 Pentatricopeptide_repeat 207 232
IPR002885 Pentatricopeptide_repeat 410 434
No external refs found!