Solyc02g091120.3.1 (Solyc02g091120.3)


Aliases : Solyc02g091120.3

Description : 28.1 DNA.synthesis/chromatin structure Encodes a novel plant specific DNA ligase that is involved in seed germination and DNA repair. DNA LIGASE 6 (LIG6)


Gene families : OG_01_0001605 (Gene family) Phylogenetic Tree(s): OG0001605_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc02g091120.3.1
Cluster HCCA cluster: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AT1G66730 AtLIG6, LIG6 DNA LIGASE 6 0.02 Gene family
MA_10427015g0010 No alias 28.1 DNA.synthesis/chromatin structure Encodes a novel... 0.01 Gene family
Zm00001d043835 GRMZM2G083629,... 28.1 DNA.synthesis/chromatin structure Encodes a novel... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
MF GO:0003910 DNA ligase (ATP) activity IEA InterProScan
BP GO:0006281 DNA repair IEA InterProScan
BP GO:0006310 DNA recombination IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011084 DRMBL 272 374
IPR012309 DNA_ligase_ATP-dep_C 1304 1412
IPR012310 DNA_ligase_ATP-dep_cent 1058 1278
IPR012308 DNA_ligase_ATP-dep_N 815 991
No external refs found!