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  5. AMTR_s00115p00126760

AMTR_s00115p00126760 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00115.20

Description : RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor


Gene families : OG_01_0005447 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005447_tree ,
OG_02_0005206 (LandPlants) Phylogenetic Tree(s): OG_02_0005206_tree ,
OG_03_0007524 (SeedPlants) Phylogenetic Tree(s): OG_03_0007524_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00115p00126760
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g42970.1 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
MA_8911g0010 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
Solyc12g017410.2.1 No alias C3H zinc finger transcription factor 0.06 Archaeplastida
LOC_Os01g42970.1 No alias C3H zinc finger transcription factor 0.02 LandPlants
MA_8911g0010 No alias C3H zinc finger transcription factor 0.03 LandPlants
Solyc12g017410.2.1 No alias C3H zinc finger transcription factor 0.05 LandPlants
LOC_Os01g42970.1 No alias C3H zinc finger transcription factor 0.02 SeedPlants
MA_8911g0010 No alias C3H zinc finger transcription factor 0.03 SeedPlants
Solyc12g017410.2.1 No alias C3H zinc finger transcription factor 0.05 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 353 377
IPR000571 Znf_CCCH 434 455
IPR000571 Znf_CCCH 486 511
IPR000571 Znf_CCCH 219 245
IPR000571 Znf_CCCH 168 193
IPR000571 Znf_CCCH 274 298
No external refs found!