Solyc02g088550.3.1 (Solyc02g088550.3)

Aliases : Solyc02g088550.3

Description : 29.5.11 protein.degradation.ubiquitin U-box domain-containing protein

Gene families : OG_01_0003411 (Gene family) Phylogenetic Tree(s): OG0003411_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): Solyc02g088550.3.1
Cluster	HCCA cluster: Cluster_37

Target	Alias	Description	ECC score	Gene Family Method
AT5G15400	No alias	U-box domain-containing protein	0.04	Gene family
GSVIVT01011484001	No alias	29.5.11 protein.degradation.ubiquitin U-box...	0.08	Gene family
MA_16148g0010	No alias	29.5.11 protein.degradation.ubiquitin U-box...	0.03	Gene family
Smo142432	PACid_15412612	No description available	0.06	Gene family
Zm00001d029561	GRMZM2G030805	29.5.11 protein.degradation.ubiquitin U-box...	0.04	Gene family

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEA	InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	InterProScan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	InterProScan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034450	ubiquitin-ubiquitin ligase activity	IEA	InterProScan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	None	Extended
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	948	1019
IPR019474	Ub_conjug_fac_E4_core	263	931

External Links

No external refs found!

Solyc02g088550.3.1 (Solyc02g088550.3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation