Solyc02g087840.3.1 (Solyc02g087840.3)


Aliases : Solyc02g087840.3

Description : No description available


Gene families : OG_01_0000092 (Gene family) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc02g087840.3.1
Cluster HCCA cluster: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AT1G27045 No alias Homeobox-leucine zipper protein family 0.04 Gene family
AT2G46680 HB-7, ATHB-7, ATHB7 homeobox 7 0.02 Gene family
AT3G01220 ATHB20, HB20 homeobox protein 20 0.02 Gene family
AT4G36740 ATHB40, HB40, HB-5 homeobox protein 40 0.03 Gene family
AT5G53980 ATHB52, HB52 homeobox protein 52 0.02 Gene family
GSVIVT01019655001 No alias No description available 0.03 Gene family
GSVIVT01020033001 No alias No description available 0.03 Gene family
LOC_Os04g45810 Os04g0541700 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
Solyc02g067410.2.1 Solyc02g067410.2 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
Zm00001d002799 GRMZM2G351330 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.04 Gene family
Zm00001d014201 GRMZM5G803812 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
Zm00001d021268 GRMZM2G041462 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
Zm00001d025964 GRMZM2G396527 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
Zm00001d027852 GRMZM2G139963 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
Zm00001d048227 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
MF GO:0043565 sequence-specific DNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001356 Homeobox_dom 95 148
IPR003106 Leu_zip_homeo 150 190
No external refs found!