Solyc02g087360.3.1 (Solyc02g087360.3)

Aliases : Solyc02g087360.3

Description : 27.3.67 RNA.regulation of transcription.putative transcription regulator Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190). SIN3-like 2 (SNL2)

Gene families : OG_01_0000397 (Gene family) Phylogenetic Tree(s): OG0000397_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): Solyc02g087360.3.1
Cluster	HCCA cluster: Cluster_37

Target	Alias	Description	ECC score	Gene Family Method
AT1G10450	SNL6	SIN3-like 6	0.05	Gene family
AT1G24190	SNL3, ATSIN3, SIN3	SIN3-like 3	0.11	Gene family
AT1G70060	SNL4	SIN3-like 4	0.04	Gene family
AT3G01320	SNL1	SIN3-like 1	0.11	Gene family
AT5G15020	SNL2	SIN3-like 2	0.11	Gene family
Cpa\|evm.model.tig00001155.28	No alias	35.1.25 not assigned.no ontology.paired amphipathic...	0.02	Gene family
Cpa\|evm.model.tig00021234.23	No alias	35.1.25 not assigned.no ontology.paired amphipathic...	0.02	Gene family
Cre03.g180800	No alias	35.1.25 not assigned.no ontology.paired amphipathic...	0.02	Gene family
GSVIVT01020136001	No alias	35.1.25 not assigned.no ontology.paired amphipathic...	0.1	Gene family
GSVIVT01032579001	No alias	27.3.67 RNA.regulation of transcription.putative...	0.12	Gene family
LOC_Os01g01960	Os01g0109700	35.1.25 not assigned.no ontology.paired amphipathic...	0.01	Gene family
MA_18241g0010	No alias	35.1.25 not assigned.no ontology.paired amphipathic...	0.04	Gene family
Zm00001d008429	GRMZM2G334457	35.1.25 not assigned.no ontology.paired amphipathic...	0.14	Gene family
Zm00001d040123	GRMZM2G075320	35.1.25 not assigned.no ontology.paired amphipathic...	0.19	Gene family

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR031693	Sin3_C	1074	1321
IPR003822	PAH	160	204
IPR003822	PAH	360	410
IPR003822	PAH	76	120
IPR013194	HDAC_interact_dom	478	569

External Links

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Solyc02g087360.3.1 (Solyc02g087360.3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation