Solyc02g086990.3.1 (Solyc02g086990.3)


Aliases : Solyc02g086990.3

Description : 34.22 transport.cyclic nucleotide or calcium regulated channels Encodes a member of the cyclic nucleotide gated channel family that is asymmetrically localized to the plasma membrane at the growing tip of the pollen tube and is involved in pollen tube growth. It likely directly transduces a cNMP signal into an ion flux that can produce a localized signal capable of regulating the pollen tip-growth machinery. cyclic nucleotide-gated channel 18 (CNGC18)


Gene families : OG_01_0000081 (Gene family) Phylogenetic Tree(s): OG0000081_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc02g086990.3.1
Cluster HCCA cluster: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AT1G15990 CNGC7, ATCNGC7 cyclic nucleotide gated channel 7 0.02 Gene family
AT1G19780 ATCNGC8, CNGC8 cyclic nucleotide gated channel 8 0.07 Gene family
AT2G24610 ATCNGC14, CNGC14 cyclic nucleotide-gated channel 14 0.03 Gene family
AT3G48010 ATCNGC16, CNGC16 cyclic nucleotide-gated channel 16 0.04 Gene family
AT5G14870 CNGC18, ATCNGC18 cyclic nucleotide-gated channel 18 0.06 Gene family
GSVIVT01015970001 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
GSVIVT01029404001 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
LOC_Os06g08850 Os06g0188000 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
LOC_Os06g10580 Os06g0207700 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
LOC_Os09g38580 Os09g0558300 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family
Solyc01g095770.3.1 Solyc01g095770.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.01 Gene family
Solyc03g098210.3.1 Solyc03g098210.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family
Solyc03g116850.3.1 Solyc03g116850.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family
Solyc05g050380.3.1 Solyc05g050380.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
Solyc06g051920.3.1 Solyc06g051920.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family
Solyc07g005590.3.1 Solyc07g005590.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.04 Gene family
Solyc07g006510.3.1 Solyc07g006510.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.04 Gene family
Solyc08g069140.3.1 Solyc08g069140.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
Solyc12g010010.2.1 Solyc12g010010.2 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family
Zm00001d002099 GRMZM2G023037 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
Zm00001d007925 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.07 Gene family
Zm00001d021388 GRMZM2G135651 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
Zm00001d037035 GRMZM2G129375,... 34.22 transport.cyclic nucleotide or calcium regulated... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA InterProScan
BP GO:0006811 ion transport IEA InterProScan
CC GO:0016020 membrane IEA InterProScan
BP GO:0055085 transmembrane transport IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 45 371
IPR000595 cNMP-bd_dom 469 554
No external refs found!