Solyc02g084920.3.1 (Solyc02g084920.3)

Aliases : Solyc02g084920.3

Description : 29.5.11.20 protein.degradation.ubiquitin.proteasom Encodes 20S proteasome beta subunit PBF1 (PBF1). PBF1

Gene families : OG_01_0003741 (Gene family) Phylogenetic Tree(s): OG0003741_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): Solyc02g084920.3.1
Cluster	HCCA cluster: Cluster_255

Target	Alias	Description	ECC score	Gene Family Method
AT3G60820	PBF1	N-terminal nucleophile aminohydrolases (Ntn hydrolases)...	0.11	Gene family
Cpa\|evm.model.tig00001339.5	No alias	29.5.11.20 protein.degradation.ubiquitin.proteasom...	0.07	Gene family
Cre26.g756797	No alias	29.5.11.20 protein.degradation.ubiquitin.proteasom...	0.16	Gene family
GSVIVT01027613001	No alias	29.5.11.20 protein.degradation.ubiquitin.proteasom...	0.08	Gene family
LOC_Os09g32800	Os09g0505600	29.5.11.20 protein.degradation.ubiquitin.proteasom...	0.06	Gene family
Smo124882	PACid_15407096	29.5.11.20 protein.degradation.ubiquitin.proteasom...	0.02	Gene family
Smo94273	PACid_15422737	29.5.11.20 protein.degradation.ubiquitin.proteasom...	0.04	Gene family
Zm00001d006085	GRMZM5G817037	29.5.11.20 protein.degradation.ubiquitin.proteasom...	0.05	Gene family
Zm00001d021051	GRMZM2G074386	29.5.11.20 protein.degradation.ubiquitin.proteasom...	0.04	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004298	threonine-type endopeptidase activity	IEA	InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005839	proteasome core complex	IEA	InterProScan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEA	InterProScan
MF	GO:0070003	threonine-type peptidase activity	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	13	207

External Links

No external refs found!