Aspi01Gene70267.t1 (Aspi01Gene70267)

Aliases : Aspi01Gene70267

Description : chromatin remodeling factor *(ALC1) & original description: none

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene70267.t1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00053p00098350	CHR5,...	RNA biosynthesis.RNA polymerase II-dependent...	0.03	OrthoFinder output from all 47 species
AMTR_s00071p00058700	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.03	OrthoFinder output from all 47 species
AMTR_s00086p00165640	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
AT2G13370	CHR5	chromatin remodeling 5	0.04	OrthoFinder output from all 47 species
AT2G28290	SYD, CHR3	P-loop containing nucleoside triphosphate hydrolases...	0.03	OrthoFinder output from all 47 species
AT3G06010	ATCHR12	Homeotic gene regulator	0.03	OrthoFinder output from all 47 species
AT5G44800	PKR1, CHR4	chromatin remodeling 4	0.04	OrthoFinder output from all 47 species
Adi_g104730	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g03411	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
Aev_g04898	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g06279	CHR17	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	OrthoFinder output from all 47 species
Ala_g11507	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ala_g12634	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g27421	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g05142	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g16533	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g56902	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Aob_g29249	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.07	OrthoFinder output from all 47 species
Aop_g05323	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g06040	CHR5	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.10G020300.1	CHR5, Ceric.10G020300	component *(CHR5) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Ceric.37G008600.1	SYD, CHR3,...	SMARCA component *(SYD/BRM/MINU) & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000128.11	CHR17	ISWI chromatin-remodeling complex ATPase CHR17...	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021275.25	CHR11	Probable chromatin-remodeling complex ATPase chain...	0.02	OrthoFinder output from all 47 species
Cre09.g390000	CHR17	RNA biosynthesis.transcriptional activation.PHD finger...	0.02	OrthoFinder output from all 47 species
Dcu_g42511	PKL, GYM, CHR6,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01018218001	No alias	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Gb_35181	CHR5	chromatin remodeling factor (Chd1). component CHR5 of...	0.03	OrthoFinder output from all 47 species
Lfl_g02374	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g04300	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g28014	PKL, GYM, CHR6,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g30624	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
MA_102992g0020	CHR11	Probable chromatin-remodeling complex ATPase chain...	0.03	OrthoFinder output from all 47 species
MA_10427196g0010	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.03	OrthoFinder output from all 47 species
MA_10430012g0010	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.03	OrthoFinder output from all 47 species
MA_141135g0010	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.03	OrthoFinder output from all 47 species
Pir_g38744	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005448	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g29220	No alias	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Smo155996	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Solyc06g065730.3.1	PKL, GYM, CHR6,...	chromatin remodeling factor (Chd3/Mi-2)	0.04	OrthoFinder output from all 47 species
Solyc11g062010.3.1	SYD, CHR3, Solyc11g062010	chromatin remodeling factor (Snf2)	0.05	OrthoFinder output from all 47 species
Zm00001e030969_P003	SYD, CHR3, Zm00001e030969	chromatin remodeling factor (Snf2)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	44	413
IPR001650	Helicase_C	437	555

External Links

No external refs found!

Aspi01Gene70267.t1 (Aspi01Gene70267)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation