Solyc02g083560.3.1 (Solyc02g083560.3)


Aliases : Solyc02g083560.3

Description : 29.3.4.3 protein.targeting.secretory pathway.vacuole Encodes a protein with similarity to yeast VPS35 which encodes a component of the retromer involved in retrograde endosomal transport. Mutants partially suppress the loss of VTI11 function in Arabidopsis and restores gravitropism in the double mutant. VPS35 homolog A (VPS35A)


Gene families : OG_01_0002944 (Gene family) Phylogenetic Tree(s): OG0002944_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc02g083560.3.1
Cluster HCCA cluster: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AT2G17790 ZIP3, VPS35A VPS35 homolog A 0.04 Gene family
AT3G51310 VPS35C VPS35 homolog C 0.04 Gene family
Cre01.g029650 No alias 29.3.4.3 protein.targeting.secretory pathway.vacuole... 0.05 Gene family
GSVIVT01009948001 No alias 29.3.4.3 protein.targeting.secretory pathway.vacuole... 0.09 Gene family
GSVIVT01018728001 No alias 29.3.4.3 protein.targeting.secretory pathway.vacuole... 0.02 Gene family
LOC_Os03g58700 Os03g0801600 29.3.4.3 protein.targeting.secretory pathway.vacuole... 0.09 Gene family
Smo167991 PACid_15423127 29.3.4.3 protein.targeting.secretory pathway.vacuole... 0.03 Gene family
Zm00001d013059 GRMZM5G844195 29.3.4.3 protein.targeting.secretory pathway.vacuole... 0.2 Gene family
Zm00001d034492 GRMZM5G825524 29.3.4.3 protein.targeting.secretory pathway.vacuole... 0.11 Gene family

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA InterProScan
CC GO:0030906 retromer, cargo-selective complex IEA InterProScan
BP GO:0042147 retrograde transport, endosome to Golgi IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005378 Vps35 12 747
No external refs found!