Solyc02g083400.3.1 (Solyc02g083400.3)


Aliases : Solyc02g083400.3

Description : 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING Intrinsic thylakoid membrane protein that fixes RPOTmp on the stromal side of the thylakoid membrane. NEP-interacting protein 2 (NIP2)


Gene families : OG_01_0000002 (Gene family) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc02g083400.3.1
Cluster HCCA cluster: Cluster_306

Target Alias Description ECC score Gene Family Method Actions
AT1G49220 No alias RING/U-box superfamily protein 0.02 Gene family
AT2G18670 No alias RING/U-box superfamily protein 0.04 Gene family
AT2G37580 No alias RING/U-box superfamily protein 0.02 Gene family
AT2G42360 No alias RING/U-box superfamily protein 0.04 Gene family
AT3G03550 No alias RING/U-box superfamily protein 0.03 Gene family
AT3G05200 ATL6 RING/U-box superfamily protein 0.03 Gene family
AT3G14320 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.02 Gene family
AT3G16720 ATL2, TL2 TOXICOS EN LEVADURA 2 0.06 Gene family
AT4G17905 ATL4H RING/U-box superfamily protein 0.02 Gene family
AT4G30370 No alias RING/U-box superfamily protein 0.02 Gene family
AT5G05280 No alias RING/U-box superfamily protein 0.03 Gene family
AT5G06490 No alias RING/U-box superfamily protein 0.03 Gene family
AT5G27420 ATL31, CNI1 carbon/nitrogen insensitive 1 0.03 Gene family
AT5G47610 No alias RING/U-box superfamily protein 0.03 Gene family
AT5G66070 No alias RING/U-box superfamily protein 0.03 Gene family
GSVIVT01008756001 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.04 Gene family
GSVIVT01015682001 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.05 Gene family
GSVIVT01019530001 No alias 35.2 not assigned.unknown RING/U-box superfamily protein 0.03 Gene family
GSVIVT01028038001 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
LOC_Os02g33720 Os02g0541500 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
LOC_Os02g36330 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
LOC_Os02g52210 Os02g0759400 No description available 0.05 Gene family
LOC_Os03g44636 Os03g0648600 No description available 0.02 Gene family
LOC_Os04g37740 Os04g0450400 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.03 Gene family
LOC_Os05g39260 Os05g0468900 No description available 0.03 Gene family
LOC_Os06g09310 Os06g0192800 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
LOC_Os06g16060 Os06g0271600 No description available 0.02 Gene family
LOC_Os08g43670 Os08g0550400 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
LOC_Os08g44950 Os08g0563500 No description available 0.02 Gene family
LOC_Os10g39450 Os10g0540000 No description available 0.03 Gene family
LOC_Os10g41660 Os10g0566400 No description available 0.02 Gene family
LOC_Os12g24490 Os12g0432600 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING E3... 0.02 Gene family
MA_3380g0010 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
MA_6208058g0010 No alias 2.2.1.5 major CHO metabolism.degradation.sucrose.Susy... 0.02 Gene family
MA_77628g0010 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
MA_786911g0010 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
MA_94359g0010 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
Smo172324 PACid_15411137 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
Smo402335 PACid_15403450 No description available 0.02 Gene family
Smo412606 PACid_15413010 No description available 0.02 Gene family
Solyc01g100095.1.1 Solyc01g100095.1 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
Solyc03g005490.3.1 Solyc03g005490.3 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.04 Gene family
Solyc03g114190.1.1 Solyc03g114190.1 No description available 0.02 Gene family
Solyc04g014220.1.1 Solyc04g014220.1 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.03 Gene family
Solyc07g006400.2.1 Solyc07g006400.2 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
Solyc12g055710.1.1 Solyc12g055710.1 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.03 Gene family
Solyc12g087840.1.1 Solyc12g087840.1 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.03 Gene family
Zm00001d002491 GRMZM2G090279 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.03 Gene family
Zm00001d002535 GRMZM2G146847 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
Zm00001d003497 GRMZM2G171277 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.05 Gene family
Zm00001d005936 GRMZM2G015753 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
Zm00001d007609 GRMZM2G041549 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.03 Gene family
Zm00001d016140 GRMZM2G358711 No description available 0.03 Gene family
Zm00001d016721 GRMZM2G451308 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
Zm00001d017645 GRMZM2G057789 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING ATL8 0.03 Gene family
Zm00001d018823 GRMZM2G029623 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
Zm00001d027685 GRMZM2G056804 No description available 0.03 Gene family
Zm00001d031880 No alias No description available 0.03 Gene family
Zm00001d037095 GRMZM2G416750 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.04 Gene family
Zm00001d045051 GRMZM2G478553 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.06 Gene family
Zm00001d046151 GRMZM2G121143 No description available 0.02 Gene family
Zm00001d051833 GRMZM5G885045 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.03 Gene family
Zm00001d053434 GRMZM2G033855 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001841 Znf_RING 193 236
No external refs found!