Solyc02g081810.3.1 (Solyc02g081810.3)


Aliases : Solyc02g081810.3

Description : 29.2.2.3.1 protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.snoRNPs Encodes a putative pseudouridine synthase (NAP57). homologue of NAP57 (NAP57)


Gene families : OG_01_0004756 (Gene family) Phylogenetic Tree(s): OG0004756_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc02g081810.3.1
Cluster HCCA cluster: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AT3G57150 CBF5, AtCBF5,... homologue of NAP57 0.08 Gene family
Cpa|evm.model.tig00000553.10 No alias 29.2.2.3.1 protein.synthesis.ribosome... 0.05 Gene family
Cre03.g172950 No alias 29.2.2.3.1 protein.synthesis.ribosome... 0.11 Gene family
GSVIVT01034188001 No alias 29.2.2.3.1 protein.synthesis.ribosome... 0.07 Gene family
LOC_Os03g25450 Os03g0370500 29.2.2.3.1 protein.synthesis.ribosome... 0.02 Gene family
LOC_Os07g44190 Os07g0636000 29.2.2.3.1 protein.synthesis.ribosome... 0.02 Gene family
MA_27456g0030 No alias 29.2.2.3.1 protein.synthesis.ribosome... 0.04 Gene family
Smo81986 PACid_15412220 No description available 0.05 Gene family
Zm00001d008327 GRMZM2G044128 29.2.2.3.1 protein.synthesis.ribosome... 0.05 Gene family
Zm00001d022265 GRMZM2G082365 29.2.2.3.1 protein.synthesis.ribosome... 0.03 Gene family
Zm00001d040293 GRMZM2G172956 29.2.2.3.1 protein.synthesis.ribosome... 0.06 Gene family

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR012960 Dyskerin-like 49 106
IPR032819 TruB_C 227 293
IPR002501 PsdUridine_synth_N 110 226
IPR002478 PUA 297 369
No external refs found!