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  5. AMTR_s00113p00140210

AMTR_s00113p00140210 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00113.32

Description : RNA processing.organelle machineries.ribonuclease activities.PNP polynucleotide phosphorylase


Gene families : OG_01_0001869 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001869_tree ,
OG_02_0002404 (LandPlants) Phylogenetic Tree(s): OG_02_0002404_tree ,
OG_03_0006667 (SeedPlants) Phylogenetic Tree(s): OG_03_0006667_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00113p00140210
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AT5G14580 No alias polyribonucleotide nucleotidyltransferase, putative 0.09 Archaeplastida
Cpa|evm.model.tig00020603.85 No alias RNA processing.organelle machineries.ribonuclease... 0.02 Archaeplastida
GSVIVT01032436001 No alias RNA processing.organelle machineries.ribonuclease... 0.06 Archaeplastida
Gb_20425 No alias polynucleotide phosphorylase (PNP) 0.06 Archaeplastida
MA_10432723g0020 No alias polynucleotide phosphorylase (PNP) 0.03 Archaeplastida
MA_10434926g0010 No alias Polyribonucleotide nucleotidyltransferase 2,... 0.06 Archaeplastida
Mp7g12350.1 No alias polynucleotide phosphorylase (PNP) 0.02 Archaeplastida
Smo84724 No alias RNA processing.organelle machineries.ribonuclease... 0.05 Archaeplastida
Solyc02g086600.3.1 No alias polynucleotide phosphorylase (PNP) 0.04 Archaeplastida
Zm00001e015113_P001 No alias polynucleotide phosphorylase (PNP) 0.08 Archaeplastida
Zm00001e032889_P001 No alias polynucleotide phosphorylase (PNP) 0.03 Archaeplastida
AT5G14580 No alias polyribonucleotide nucleotidyltransferase, putative 0.08 LandPlants
GSVIVT01032436001 No alias RNA processing.organelle machineries.ribonuclease... 0.05 LandPlants
Gb_20425 No alias polynucleotide phosphorylase (PNP) 0.05 LandPlants
MA_10432723g0020 No alias polynucleotide phosphorylase (PNP) 0.02 LandPlants
MA_10434926g0010 No alias Polyribonucleotide nucleotidyltransferase 2,... 0.05 LandPlants
Mp7g12350.1 No alias polynucleotide phosphorylase (PNP) 0.01 LandPlants
Smo84724 No alias RNA processing.organelle machineries.ribonuclease... 0.04 LandPlants
Solyc02g086600.3.1 No alias polynucleotide phosphorylase (PNP) 0.03 LandPlants
Zm00001e015113_P001 No alias polynucleotide phosphorylase (PNP) 0.07 LandPlants
AT5G14580 No alias polyribonucleotide nucleotidyltransferase, putative 0.08 SeedPlants
GSVIVT01032436001 No alias RNA processing.organelle machineries.ribonuclease... 0.05 SeedPlants
Gb_20425 No alias polynucleotide phosphorylase (PNP) 0.05 SeedPlants
LOC_Os02g40460.1 No alias polynucleotide phosphorylase (PNP) 0.01 SeedPlants
MA_10432723g0020 No alias polynucleotide phosphorylase (PNP) 0.02 SeedPlants
MA_10434926g0010 No alias Polyribonucleotide nucleotidyltransferase 2,... 0.05 SeedPlants
Solyc02g086600.3.1 No alias polynucleotide phosphorylase (PNP) 0.03 SeedPlants
Zm00001e015113_P001 No alias polynucleotide phosphorylase (PNP) 0.07 SeedPlants

Type GO Term Name Evidence Source
MF GO:0000175 3'-5'-exoribonuclease activity IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 627 674
IPR015848 PNPase_PH_RNA-bd_bac/org-type 296 375
IPR001247 ExoRNase_PH_dom1 378 511
IPR001247 ExoRNase_PH_dom1 68 197
IPR003029 S1_domain 683 753
IPR015847 ExoRNase_PH_dom2 515 590
IPR015847 ExoRNase_PH_dom2 200 263
No external refs found!