Solyc02g079260.2.1 (Solyc02g079260.2)


Aliases : Solyc02g079260.2

Description : No description available


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc02g079260.2.1
Cluster HCCA cluster: Cluster_302

Target Alias Description ECC score Gene Family Method Actions
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Gene family
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Gene family
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Gene family
AT3G25060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT5G59600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
GSVIVT01037258001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01037377001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os01g60430 Os01g0819800 No description available 0.02 Gene family
MA_210823g0010 No alias No description available 0.02 Gene family
MA_5481g0010 No alias No description available 0.03 Gene family
MA_63139g0020 No alias No description available 0.02 Gene family
MA_961981g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo101093 PACid_15422537 No description available 0.02 Gene family
Smo105729 PACid_15417162 No description available 0.02 Gene family
Zm00001d033495 GRMZM5G849971 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d037254 GRMZM2G060337 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d042067 GRMZM2G099875 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d048451 GRMZM2G171994 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d049122 GRMZM2G333678 No description available 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 623 648
IPR002885 Pentatricopeptide_repeat 520 547
IPR002885 Pentatricopeptide_repeat 320 345
IPR002885 Pentatricopeptide_repeat 219 244
IPR002885 Pentatricopeptide_repeat 651 681
IPR032867 DYW_dom 923 1046
IPR002885 Pentatricopeptide_repeat 245 290
IPR002885 Pentatricopeptide_repeat 749 797
IPR002885 Pentatricopeptide_repeat 141 187
IPR002885 Pentatricopeptide_repeat 346 393
IPR002885 Pentatricopeptide_repeat 548 595
IPR002885 Pentatricopeptide_repeat 447 493
No external refs found!