Solyc02g078350.3.1 (Solyc02g078350.3)


Aliases : Solyc02g078350.3

Description : 27.3.67 RNA.regulation of transcription.putative transcription regulator Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000285 (Gene family) Phylogenetic Tree(s): OG0000285_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc02g078350.3.1
Cluster HCCA cluster: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT5G27460 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
GSVIVT01002065001 No alias 27.3.67 RNA.regulation of transcription.putative... 0.06 Gene family
GSVIVT01014363001 No alias 27.3.67 RNA.regulation of transcription.putative... 0.07 Gene family
GSVIVT01020533001 No alias 27.3.67 RNA.regulation of transcription.putative... 0.04 Gene family
LOC_Os01g19490 Os01g0301000 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
LOC_Os01g19548 Os01g0301700 27.3.67 RNA.regulation of transcription.putative... 0.05 Gene family
LOC_Os07g40750 Os07g0598500 27.3.67 RNA.regulation of transcription.putative... 0.05 Gene family
LOC_Os10g35730 Os10g0501000 27.3.67 RNA.regulation of transcription.putative... 0.05 Gene family
LOC_Os10g35750 Os10g0501200 27.3.67 RNA.regulation of transcription.putative... 0.04 Gene family
MA_7558g0010 No alias 27.3.67 RNA.regulation of transcription.putative... 0.02 Gene family
MA_777619g0010 No alias 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
Zm00001d013923 GRMZM2G135940 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
Zm00001d032543 GRMZM2G131817 27.3.67 RNA.regulation of transcription.putative... 0.02 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 307 334
IPR002885 Pentatricopeptide_repeat 272 292
IPR002885 Pentatricopeptide_repeat 151 210
No external refs found!