Solyc02g078260.3.1 (Solyc02g078260.3)


Aliases : Solyc02g078260.3

Description : 27.2 RNA.transcription Encodes the unique second-largest subunit of DNA-dependent RNA polymerase II the ortholog of budding yeast RPB2 and a homolog of the E. coli RNA polymerase beta subunit. NRPB2


Gene families : OG_01_0000522 (Gene family) Phylogenetic Tree(s): OG0000522_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc02g078260.3.1
Cluster HCCA cluster: Cluster_285

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020554.10 No alias 27.2 RNA.transcription Encodes a subunit of RNA... 0.02 Gene family
Cre02.g075150 No alias 27.2 RNA.transcription Encodes the unique second-largest... 0.03 Gene family
Cre12.g542800 No alias 27.2 RNA.transcription Encodes a subunit of RNA... 0.02 Gene family
GSVIVT01020543001 No alias 27.2 RNA.transcription Encodes the unique second-largest... 0.05 Gene family
GSVIVT01036596001 No alias 27.2 RNA.transcription Encodes a subunit of RNA... 0.04 Gene family
GSVIVT01036597001 No alias 27.2 RNA.transcription Encodes a subunit of RNA... 0.02 Gene family
MA_10429035g0030 No alias 27.2 RNA.transcription Encodes the unique second-largest... 0.05 Gene family
MA_10432131g0010 No alias 27.2 RNA.transcription Encodes the unique second-largest... 0.02 Gene family
Smo148107 PACid_15405344 27.2 RNA.transcription Encodes the unique second-largest... 0.02 Gene family
Zm00001d013683 GRMZM2G084891,... 27.2 RNA.transcription Encodes the unique second-largest... 0.05 Gene family
Zm00001d033218 GRMZM2G020142,... 27.2 RNA.transcription Encodes the unique second-largest... 0.06 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan
BP GO:0006351 transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007646 RNA_pol_Rpb2_4 570 631
IPR007645 RNA_pol_Rpb2_3 471 535
IPR007647 RNA_pol_Rpb2_5 656 707
IPR007120 DNA-dir_RNAP_su2_dom 714 1084
IPR007641 RNA_pol_Rpb2_7 1086 1177
IPR007644 RNA_pol_bsu_protrusion 37 446
IPR007642 RNA_pol_Rpb2_2 207 398
No external refs found!