Solyc02g076700.1.1 (Solyc02g076700.1)


Aliases : Solyc02g076700.1

Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc02g076700.1.1
Cluster HCCA cluster: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Gene family
AT1G17630 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Gene family
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Gene family
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G15930 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Gene family
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT4G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT5G27110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
GSVIVT01015325001 No alias No description available 0.03 Gene family
LOC_Os07g05560 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os07g20420 Os07g0299800 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os10g40920 Os10g0558600 No description available 0.05 Gene family
LOC_Os11g01836 Os11g0109600 No description available 0.08 Gene family
LOC_Os11g45410 Os11g0679900,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_11454g0010 No alias No description available 0.03 Gene family
MA_140591g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_18165g0010 No alias No description available 0.02 Gene family
MA_39595g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
MA_61422g0020 No alias No description available 0.02 Gene family
MA_67032g0010 No alias No description available 0.02 Gene family
MA_86628g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo109721 PACid_15406466 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo94945 PACid_15405705 No description available 0.02 Gene family
Zm00001d003047 GRMZM2G077420 No description available 0.05 Gene family
Zm00001d003050 GRMZM2G331779 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d012961 GRMZM2G144071 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d013136 GRMZM5G892151 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d013941 GRMZM2G073017 No description available 0.08 Gene family
Zm00001d017518 GRMZM2G014977 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d021411 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d028388 No alias 35.1.27 not assigned.no ontology.tetratricopeptide... 0.06 Gene family
Zm00001d029764 GRMZM2G383854 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.08 Gene family
Zm00001d030143 GRMZM2G430710 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d037254 GRMZM2G060337 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d037891 No alias No description available 0.07 Gene family
Zm00001d044547 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d049122 GRMZM2G333678 No description available 0.06 Gene family
Zm00001d051576 GRMZM2G110483 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d051816 GRMZM2G029859 No description available 0.06 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 290 317
IPR002885 Pentatricopeptide_repeat 351 379
IPR002885 Pentatricopeptide_repeat 514 560
IPR002885 Pentatricopeptide_repeat 73 101
IPR002885 Pentatricopeptide_repeat 137 165
IPR002885 Pentatricopeptide_repeat 589 615
IPR002885 Pentatricopeptide_repeat 260 288
IPR002885 Pentatricopeptide_repeat 104 130
IPR002885 Pentatricopeptide_repeat 384 414
IPR002885 Pentatricopeptide_repeat 229 258
IPR002885 Pentatricopeptide_repeat 198 222
IPR002885 Pentatricopeptide_repeat 167 196
IPR002885 Pentatricopeptide_repeat 42 71
IPR002885 Pentatricopeptide_repeat 486 509
IPR002885 Pentatricopeptide_repeat 325 346
IPR002885 Pentatricopeptide_repeat 415 444
No external refs found!