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  5. Aspi01Gene62384.t3

Aspi01Gene62384.t3 (PKR1, CHR4, Aspi01Gene62384)


Aliases : PKR1, CHR4, Aspi01Gene62384

Description : CHD3-type chromatin remodeling factor *(PKL/PKR) & original description: none


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene62384.t3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00063470 CHR01, CHR1,... Chromatin organisation.DNA methylation.RNA-independent... 0.02 OrthoFinder output from all 47 species
AT2G13370 CHR5 chromatin remodeling 5 0.02 OrthoFinder output from all 47 species
Adi_g004816 SYD, CHR3 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g011955 SYD, CHR3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058025 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g082550 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11306 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36219 ATCHR12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g29989 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Aop_g06101 No alias chromatin remodeling factor *(ALC1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13607 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Aspi01Gene14150.t2 CHR11, Aspi01Gene14150 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene24030.t1 CHR5, Aspi01Gene24030 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene47130.t1 SYD, CHR3,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene47132.t1 SYD, CHR3,... not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene50700.t2 PKR1, CHR4,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.05 OrthoFinder output from all 47 species
Cba_g06827 PKR1, CHR4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g23143 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Cba_g33369 CHR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000128.11 CHR17 ISWI chromatin-remodeling complex ATPase CHR17... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020960.24 CHR5 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre03.g158550 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.01 OrthoFinder output from all 47 species
Dcu_g02069 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Dcu_g38948 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03505 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Len_g29294 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Lfl_g06769 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Msp_g13206 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Ore_g18803 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Pir_g52065 PKL, GYM, CHR6,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g04716 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.08 OrthoFinder output from all 47 species
Ppi_g07635 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.05 OrthoFinder output from all 47 species
Smo155996 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Smo164481 SYD, CHR3 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Spa_g02554 PKL, GYM, CHR6,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g21583 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.04 OrthoFinder output from all 47 species
Spa_g24876 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g30961 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Spa_g36192 CHR11 not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 1126 1239
IPR000330 SNF2_N 828 1102
IPR009463 DUF1087 1423 1462
IPR019787 Znf_PHD-finger 297 339
IPR023780 Chromo_domain 722 766
No external refs found!