Aspi01Gene59227.t1 (ATPUB17, PUB17,...)

Aliases : ATPUB17, PUB17, Aspi01Gene59227

Description : not classified & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene59227.t1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00072p00171260	PUB14, ATPUB14,...	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
Adi_g017517	ATPUB17, PUB17	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Adi_g019046	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g080188	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.01	OrthoFinder output from all 47 species
Als_g07222	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g04849	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene01377.t1	PUB14, ATPUB14,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.07G010000.1	PUB13, ATPUB13,...	E3 ubiquitin ligase & original description:...	0.01	OrthoFinder output from all 47 species
Ceric.26G012900.1	Ceric.26G012900	not classified & original description: pacid=50598948...	0.02	OrthoFinder output from all 47 species
Ceric.32G061700.1	Ceric.32G061700	not classified & original description: pacid=50598646...	0.06	OrthoFinder output from all 47 species
Ceric.34G048100.1	Ceric.34G048100	E3 ubiquitin ligase & original description:...	0.06	OrthoFinder output from all 47 species
Dac_g08066	ATPUB17, PUB17	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Len_g20959	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g37725	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.01	OrthoFinder output from all 47 species
Nbi_g38088	ATPUB17, PUB17	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g05165	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g35149	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g01971	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g20244	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g30846	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g30958	PUB13, ATPUB13	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003607	ATPUB17, PUB17	not classified & original description: CDS=1-2595	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017096	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: CDS=1-1548	0.01	OrthoFinder output from all 47 species
Smo75609	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula	0.01	OrthoFinder output from all 47 species
Solyc02g072080.1.1	ATPUB17, PUB17,...	U-box domain-containing protein 17 OS=Arabidopsis...	0.01	OrthoFinder output from all 47 species
Tin_g10003	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	385	422
IPR000225	Armadillo	474	506
IPR003613	Ubox_domain	251	322

External Links

No external refs found!

Aspi01Gene59227.t1 (ATPUB17, PUB17,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation