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  5. Aspi01Gene57148.t1

Aspi01Gene57148.t1 (emb1138, Aspi01Gene57148)


Aliases : emb1138, Aspi01Gene57148

Description : group-II intron splicing RNA helicase *(RH3) & original description: none


Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene57148.t1
Cluster HCCA: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00168720 emb1138,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00126p00110160 PMH2, ATRH53,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Adi_g079817 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Als_g07437 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Aob_g15554 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0027.g023578 emb1138 not classified & original description: CDS=239-2545 0.03 OrthoFinder output from all 47 species
Dde_g04423 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01031360001 emb1138 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
Gb_35745 emb1138 RH3 plastidial RNA basal splicing factor 0.03 OrthoFinder output from all 47 species
Lfl_g10151 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Mp3g17170.1 emb1138 RH3 plastidial RNA basal splicing factor. RNA helicase (PMH) 0.02 OrthoFinder output from all 47 species
Ore_g29256 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Sam_g13634 No alias group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Solyc08g042050.3.1 emb1138, Solyc08g042050 RH3 plastidial RNA basal splicing factor 0.03 OrthoFinder output from all 47 species
Spa_g17328 emb1138 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g40629 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012562 GUCT 578 680
IPR001878 Znf_CCHC 774 789
IPR011545 DEAD/DEAH_box_helicase_dom 173 345
IPR001650 Helicase_C 383 491
No external refs found!