Aspi01Gene55123.t1 (ARF6, Aspi01Gene55123)

Aliases : ARF6, Aspi01Gene55123

Description : ARF-type transcription factor & original description: none

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene55123.t1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00044p00116500	ARF1,...	Auxin response factor 7 OS=Oryza sativa subsp. japonica	0.03	OrthoFinder output from all 47 species
AMTR_s00211p00025860	MP, IAA24, ARF5,...	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
Adi_g011925	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g054964	ARF16	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g068596	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g088539	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g33060	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g06737	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0005.g009155	ARF6	ARF-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Azfi_s0038.g026103	ARF6	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0065.g035934	No alias	not classified & original description: CDS=1-342	0.03	OrthoFinder output from all 47 species
Azfi_s0099.g044147	ARF16	ARF-type transcription factor & original description: CDS=1-2757	0.03	OrthoFinder output from all 47 species
Cba_g19294	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.10G078200.1	ARF6, Ceric.10G078200	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.30G022300.1	ARF6, Ceric.30G022300	ARF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Dac_g20944	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g30682	ARF10	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01025159001	ARF4	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
LOC_Os04g36054.1	ARF1, LOC_Os04g36054	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
LOC_Os06g46410.1	ARF6, LOC_Os06g46410	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Len_g14660	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g28161	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g12182	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g35515	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
MA_10432349g0010	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
MA_10432528g0010	ARF4	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Mp1g07070.1	ARF10	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Pir_g41869	ARF17	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007919	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: CDS=1-3501	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0204.g025692	ARF10	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g04406	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g16405	No alias	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g28812	No alias	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Smo115320	ARF6	Auxin response factor 25 OS=Oryza sativa subsp. japonica	0.03	OrthoFinder output from all 47 species
Solyc07g043610.3.1	ARF6, Solyc07g043610	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Solyc08g008380.4.1	ARF9, Solyc08g008380	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e013061_P001	ARF16, Zm00001e013061	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	950	989
IPR010525	ARF_dom	252	335
IPR003340	B3_DNA-bd	126	227

External Links

No external refs found!

Aspi01Gene55123.t1 (ARF6, Aspi01Gene55123)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation